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GATGCAGACAAGAAGGGACTCGGTGCAATTGCTGAGGAGGTGAAGCAGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAGgtatattgtgcgtactaggtgtgctacgcaggaaagtagaaatgagaaatatccatgacatattggtgttgcattttcag
species | Zea mays |
transcript | GRMZM2G015132_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAG GGCGGCACCTTCACTGTATCAAATTTGGGAGGTCCCTTCGGAATTAAACAAEST: gi|71761137|gb|DR959074.1|DR959074
genomic: AGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAGgtatattgtg ... gcattttcagGGCGGCACCTTCACTGTATCAAATTTGGGAGGTCCCTTCGGAATTAAACAA
EST: AGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAG GGCGGCACCTTCACTGTATCAAATTTGGGAGGTCCCTTCGGAATTAAACAAEST: gi|76932163|gb|DV172956.1|DV172956
genomic: AGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAGgtatattgtg ... gcattttcagGGCGGCACCTTCACTGTATCAAATTTGGGAGGTCCCTTCGGAATTAAACAA
EST: AGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAG GGCGGCACCTTCACTGTATCAAATTTGGGAGGTCCCTTCGGAATTAAACAAEST: gi|71333154|gb|DR803611.1|DR803611
genomic: AGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAGgtatattgtg ... gcattttcagGGCGGCACCTTCACTGTATCAAATTTGGGAGGTCCCTTCGGAATTAAACAA
EST: AGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAG GGCGGCACCTTCACTGTATCAAATTTGGGAGGTCCCTTCGGAATTAAACAAEST: gi|211011840|gb|FL066266.1|FL066266
genomic: AGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAGgtatattgtg ... gcattttcagGGCGGCACCTTCACTGTATCAAATTTGGGAGGTCCCTTCGGAATTAAACAA
EST: AGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAG GGCGGCACCTTCACTGTATCAAATTTGGGAGGTCCCTTCGGAATTAAACAAEST: gi|78091151|gb|DV519525.1|DV519525
genomic: AGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAGgtatattgtg ... gcattttcagGGCGGCACCTTCACTGTATCAAATTTGGGAGGTCCCTTCGGAATTAAACAA
EST: AGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAG GGCGGCACCTTCACTGTATCAAATTTGGGAGGTCCCTTCGGAATTAAACAA
genomic: AGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAGgtatattgtg ... gcattttcagGGCGGCACCTTCACTGTATCAAATTTGGGAGGTCCCTTCGGAATTAAACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCAGACAAGAAGGGACTCGGTGCAATTGCTGAGGAGGTGAAGCAGTTGGCTCAAAAAGCAAGAGATAATAGCCTAAAACCAGCAGATTACGAGgtatattgtgcgtactaggtgtgctacgcaggaaagtagaaatgagaaatatccatgacatattggtgttgcattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT