1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCAACCCTCACGGTTGTGTCCACGAGACGATTACAGTCAGCAATGCAACTGGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGGgtacgatcttgcctgtcgtttgctgttcgtttttgtgcctggctttttttctacaacacaacttaaactacgaaattaagtccgaagagtgctacttgcaactctagtaaatactcttttttttttgccgtgcag
species | Zea mays |
transcript | GRMZM2G011068_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGG GTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTGEST: gi|74235894|gb|DT643808.1|DT643808
genomic: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGGgtacgatctt ... tgccgtgcagGTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTG
EST: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGG GTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTGEST: gi|91053741|gb|EB164159.1|EB164159
genomic: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGGgtacgatctt ... tgccgtgcagGTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTG
EST: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGG GTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTGEST: gi|71436329|gb|DR817379.1|DR817379
genomic: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGGgtacgatctt ... tgccgtgcagGTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTG
EST: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGG GTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTGEST: gi|14243116|gb|BG840866.2|BG840866
genomic: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGGgtacgatctt ... tgccgtgcagGTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTG
EST: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGG GTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTGEST: gi|71766060|gb|DR963997.1|DR963997
genomic: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGGgtacgatctt ... tgccgtgcagGTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTG
EST: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGG GTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTGEST: gi|211272648|gb|FL458530.1|FL458530
genomic: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGGgtacgatctt ... tgccgtgcagGTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTG
EST: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGG GTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTGEST: gi|32164828|gb|CD670146.1|CD670146
genomic: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGGgtacgatctt ... tgccgtgcagGTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTG
EST: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCTCAGCTGGTTTCCTGG GTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTGEST: gi|37399402|gb|CF637028.1|CF637028
genomic: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGGgtacgatctt ... tgccgtgcagGTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTG
EST: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGG GTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTGEST: gi|14242663|gb|BG840351.2|BG840351
genomic: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGGgtacgatctt ... tgccgtgcagGTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTG
EST: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGG GTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTGEST: gi|60354868|gb|DN221841.1|DN221841
genomic: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGGgtacgatctt ... tgccgtgcagGTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTG
EST: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGG GTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTG
genomic: GGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGGgtacgatctt ... tgccgtgcagGTACTCGTGGACGATTGCAGCATGCATGGCCTGCGAGTCCCACATAGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAACCCTCACGGTTGTGTCCACGAGACGATTACAGTCAGCAATGCAACTGGGCTAGCACTCATTGGCAATCCTTCGAAAGTCCACAGCTGGTTTCCTGGgtacgatcttgcctgtcgtttgctgttcgtttttgtgcctggctttttttctacaacacaacttaaactacgaaattaagtccgaagagtgctacttgcaactctagtaaatactcttttttttttgccgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG