1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CATGCTTACTCAAAGCAGGCTTCTCATGCACCATTATCATTTTGGCCTCGGTGGGTATATGAAATGTATGATTCATATACACTTGCTCGCAGTGCTGCAGgtatagaaatccaatctcatcaacctatgttttatatctgcagttttgtaaaactcttttcctgttactctaagataagtgcaagctgcctgaggtctcattggaatatttggtcaattgtttgaattacaccggtgccttggttgcag
species | Zea mays |
transcript | GRMZM2G011068_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGGGTATATGAAATGTATGATTCATATACACTTGCTCGCAGTGCTGCAG AGTTATGGAGACAGATAATTGCAAACCCAAGCATGGACGATCATGTAAGAAEST: gi|93012150|gb|EB637670.1|EB637670
genomic: GTGGGTATATGAAATGTATGATTCATATACACTTGCTCGCAGTGCTGCAGgtatagaaat ... ttggttgcagAGTTATGGAGACAGATAATTGCAAACCCAAGCATGGACGATCATGTAAGAA
EST: TGGGTATATGAAATGTATGATTCATATACACTTGCTCCGCAGTGCTGCAG AGCTATGGAGACAGATAATTGCAAACCCAAGCATGGACGATCATGTAAGAAEST: gi|37399402|gb|CF637028.1|CF637028
genomic: TGGGTATATGAAATGTATGATTCATATACACTTGCT-CGCAGTGCTGCAGgtatagaaat ... ttggttgcagAGTTATGGAGACAGATAATTGCAAACCCAAGCATGGACGATCATGTAAGAA
EST: GTGGGTATATGAAATGTATGATTCATATACACTTGCTCGCAGTGCTGCAG AGTTATGGAGACAGATAATTGCAAACCCAAGCATGGACGATCATGTAAGAA
genomic: GTGGGTATATGAAATGTATGATTCATATACACTTGCTCGCAGTGCTGCAGgtatagaaat ... ttggttgcagAGTTATGGAGACAGATAATTGCAAACCCAAGCATGGACGATCATGTAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCTTACTCAAAGCAGGCTTCTCATGCACCATTATCATTTTGGCCTCGGTGGGTATATGAAATGTATGATTCATATACACTTGCTCGCAGTGCTGCAGgtatagaaatccaatctcatcaacctatgttttatatctgcagttttgtaaaactcttttcctgttactctaagataagtgcaagctgcctgaggtctcattggaatatttggtcaattgtttgaattacaccggtgccttggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG