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gtaagtccaaacatgttatcattcttttgaaatatgaacattttaaagaatatagctagcttcatttactcttctcaatagGTGTGGGGTGAGGTACAAATTATTGAAGAAGATACTCCCTTGAGAACTCCTAGAGATGCATTTGCTCAGGTAGCTGCATGCAATACCTTCAATTTGCATG
species | Zea mays |
transcript | GRMZM2G011068_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCAGCAAAGATTTCGTTTAAGGAGGCATTGGATTGATGTTGATCGGGTG GTGTGGGGTGAGGTACAAATTATTGAAGAAGATACTCCCTTGAGAACTCCTEST: gi|71448594|gb|DR829644.1|DR829644
genomic: GGCAGCAAAGATTTCGTTTAAGGAGGCATTGGATTGATGTTGATCGGGTGgtaagtccaa ... ttctcaatagGTGTGGGGTGAGGTACAAATTATTGAAGAAGATACTCCCTTGAGAACTCCT
EST: GGCAGCAAAGATTTCGTTTAAGGAGGCATTGGATTGATGTTGATCGGGTG GTGTGGGGTGAGGTACAAATTATTGAAGAAGATACTCCCTTGAGAACTCCTEST: gi|71436330|gb|DR817380.1|DR817380
genomic: GGCAGCAAAGATTTCGTTTAAGGAGGCATTGGATTGATGTTGATCGGGTGgtaagtccaa ... ttctcaatagGTGTGGGGTGAGGTACAAATTATTGAAGAAGATACTCCCTTGAGAACTCCT
EST: GGCAGCAAAGATTTCGTTTAAGGAGGCATTGGATTGATGTTGATCGGGTG GTGTGGGGTGAGGTACAAATTATTGAAGAAGATACTCCCTTGAGAACTCCTEST: gi|16926249|gb|BM079317.1|BM079317
genomic: GGCAGCAAAGATTTCGTTTAAGGAGGCATTGGATTGATGTTGATCGGGTGgtaagtccaa ... ttctcaatagGTGTGGGGTGAGGTACAAATTATTGAAGAAGATACTCCCTTGAGAACTCCT
EST: GGCAGCAAAGATTTCGTTTAAGGAGGCATTGGATTGATGTTGATCGGGTG GTGTGGGGTGATGNNNNNNNNATTGAAGAAGATACTCCCTTGAGAACTCCTEST: gi|76288774|gb|DV028342.1|DV028342
genomic: GGCAGCAAAGATTTCGTTTAAGGAGGCATTGGATTGATGTTGATCGGGTGgtaagtccaa ... ttctcaatagGTGTGGGGTGAGGTACAAATTATTGAAGAAGATACTCCCTTGAGAACTCCT
EST: GGCAGCAAAGATTTCGTTTAAGGAGGCATTGGATTGATGTTGATCGGGTG GTGTGGGGTGAGGTACAAATTATTGAAGAAGATACTCCCTTGAGAACTCCT
genomic: GGCAGCAAAGATTTCGTTTAAGGAGGCATTGGATTGATGTTGATCGGGTGgtaagtccaa ... ttctcaatagGTGTGGGGTGAGGTACAAATTATTGAAGAAGATACTCCCTTGAGAACTCCT
ttgaaatatgaacattttaaagaatatagctagcttcatttactcttctcaatagGTGTGGGGTGAGGTACAAATTATTGAAGAAGATACTCCCTTGAGAACTCCTAGAGATGCATTTGCTCAGGTAGCTGCATGCAATACCTTCAATTTGCATG
cttcatttactcttct CT-rich tract
atatgaacattttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtccaaacatgttatcattcttttgaaatatgaacattttaaagaatatagctagcttcatttactcttctcaatagGTGTGGGGTGAGGTACAAATTATTGAAGAAGATACTCCCTTGAGAACTCCTAGAGATGCATTTGCTCAGGTAGCTGCATGCAATACCTTCAATTTGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC