1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctaacaaagtgtaaaatacataattgaatctgtgtttttttccttctgtgtggattacttttaccaccccattttgctgatttgtttgtttttcttctagTCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCTCTTGGTGCCTATGTCAACCCTCACGGTTGTGTCCACGAGACGATTACAG
species | Zea mays |
transcript | GRMZM2G011068_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAG TCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCTEST: gi|91053741|gb|EB164159.1|EB164159
genomic: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAGgtaacggtct ... tttcttctagTCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCT
EST: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAG TCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCTEST: gi|71436329|gb|DR817379.1|DR817379
genomic: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAGgtaacggtct ... tttcttctagTCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCT
EST: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAG TCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCTEST: gi|14243116|gb|BG840866.2|BG840866
genomic: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAGgtaacggtct ... tttcttctagTCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCT
EST: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAG TCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCTEST: gi|71766060|gb|DR963997.1|DR963997
genomic: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAGgtaacggtct ... tttcttctagTCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCT
EST: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAG TCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCTEST: gi|93012150|gb|EB637670.1|EB637670
genomic: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAGgtaacggtct ... tttcttctagTCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCT
EST: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAG TCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCTEST: gi|32164828|gb|CD670146.1|CD670146
genomic: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAGgtaacggtct ... tttcttctagTCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCT
EST: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAG TCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCTEST: gi|37399402|gb|CF637028.1|CF637028
genomic: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAGgtaacggtct ... tttcttctagTCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCT
EST: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAG TCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACTGACGGGCCTEST: gi|14242663|gb|BG840351.2|BG840351
genomic: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAGgtaacggtct ... tttcttctagTCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCT
EST: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAG TCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCTEST: gi|60354868|gb|DN221841.1|DN221841
genomic: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAGgtaacggtct ... tttcttctagTCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCT
EST: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAG TCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCT
genomic: AAATTCAGCTTCTCAAGGCCTTCAATCATATTAAATGTAGAAATTGCCAGgtaacggtct ... tttcttctagTCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCT
ctgtgtggattacttttaccaccccattttgctgatttgtttgtttttcttctagTCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCTCTTGGTGCCTATGTCAACCCTCACGGTTGTGTCCACGAGACGATTACAG
tgctgat putative branch site (score: 94)
tttgtttgtttttctt CT-rich tract
atttgtttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaacaaagtgtaaaatacataattgaatctgtgtttttttccttctgtgtggattacttttaccaccccattttgctgatttgtttgtttttcttctagTCTCATATAGCAAAACGTAGTGACATGGTGGTGATGTCTACCGACGGGCCTCTTGGTGCCTATGTCAACCCTCACGGTTGTGTCCACGAGACGATTACAG
-taacaaa
- - - - - - -aaataca
- - - - - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt