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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcgaaatatactgcaattcatgcttaaacaaacctacctacctcttgtaaccagatcttctaggtaacgtctgctttgttgtatgactgactattttcagGCGGAACAAAGCATTAGTTAAAGAGCTGAGTAAGCCGCCTCCTGGTTCCAGTGACCTCTACTTCCCCACTCAATACTCGCAGAGTACCTTTGATCAGTTC

Basic information

species Zea mays
transcript GRMZM2G000614_T02
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000614_T01 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os01g52560.1 (Oryza sativa), 3'ss of exon 13
--------------------------------------------------------------------------------tcgaaatatac----tgcaattcatgcttaaa-caaacctacctacct---cttgtaacc---agatcttctaggtaacgtctgc-tttgttgtatgactgactattttcagGCGGAACAAAGCATTAGTTAAAGAGCTGAGTAAGCCGCCTCCTGGTTCCAGTGACCTCTACTTCCCCACTCAATACTCGCAGAGTACCTTTGATCAGTTC
                                                                                | ||| | ||     ||||||| | ||  |||     | |||   | |     | ||||    |   | | ||| ||||  |  | ||| || |||| || | |||||||||||| | ||||||||| || ||||| ||||| || || ||||||||||||  ||||||||||||||| | ||||||||||||||| |||||| ||||||||
gtaagtgcagtgttctttccacaattcaatttcttccaggagtggaggcagcattatattgttagcatgcactgtcaaccttgaagtttagatcatgcaattgaagcaaaaaatgggcttactctcttgcatctttaactcttaaggcatttagataactgcgaccttttttctatggctaattattttcagGCGAACCAAAGCATTGGTAAAAGAACTGAGCAATCCACCTCCTGGTTCCGATGACCTCTACTTCCCTAGTCAATACTCGCAGAGCACCTTTAATCAGTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaaccagatcttctaggtaacgtctgctttgttgtatgactgactattttcagGCGGAACAAAGCATTAGTTAAAGAGCTGAGTAAGCCGCCTCCTGGTTCCAGTGACCTCTACTTCCCCACTCAATACTCGCAGAGTACCTTTGATCAGTTC
                                       gactgac  putative branch site (score: 2)
                                             ctattttc  CT-rich tract
                                            actatttt  TA-rich tract