Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTTTTAATGAAAAGAGGAGGCCAGATCATATACTCTGGGCCACTGGGTAGGAACTCACATAAAGTTGTTGAATACTTTGAGgtatgtgatatgatatttgagctacttccaattatcacatagcttttagttttctgtcatcttgtgtttccttgcaacagattctgcagtaataaggatacgttttatccttctttatttgaaattctttcttctaaaatctatatatcatggtgtattcttaaaattatgtttatcattttatcaaaccag

Basic information

species Zea mays
transcript GRMZM2G000614_T02
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000614_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os01g52560.1 (Oryza sativa), 5'ss of exon 12
CTGCTTTTAATGAAAAGAGGAGGCCAGATCATATACTCTGGGCCACTGGGTAGGAACTCACATAAAGTTGTTGAATACTTTGAGgtatgtgatatgatatttgagctacttccaattatcacatagcttttagttttctgtcatcttgtgttt---ccttgcaacagattctgcagtaataaggatacgttttatccttctttatttgaaattctttcttctaaaatctatatatcatggtgtattcttaaaattatgtttatcattttatcaaaccag
 || |  || | ||||||||||||||| | ||||| ||||| ||| ||||||  || || |||||||||||||| ||||||||||| |||| | ||| |    | ||| |||   |   | ||||||||  | |   || | |||||||| |    ||||| || ||| |||||| | | | | ||| | | |          |||| || ||| |||||    || |  |  |||  |   | |||     ||| | ||   |  |||||||||| ||
TTGTTGCTACTAAAAAGAGGAGGCCAGGTTATATATTCTGGACCATTGGGTACAAATTCTCATAAAGTTGTTGAGTACTTTGAGgtttgtggtctgacacccaaactatttcacttatccccatagcttaaattcccctataatcttgtggtggtaccttgtaagagactctgcaattacatgtatatgatatg---------atttcaagttccttctttgtgaagcc-tgcatctcgaaatgttc-----atttttttgcccgctttatcaaactag