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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacatttgcagcttgcggtaatgtttttgtcatattcacatatagttgtgcttcaatctttgtttctcatcctgcagCTGCTTTTAATGAAAAGAGGAGGCCAGATCATATACTCTGGGCCACTGGGTAGGAACTCACATAAAGTTGTTGAATACTTTGAG

Basic information

species Zea mays
transcript GRMZM2G000614_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000614_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os01g52560.1 (Oryza sativa), 3'ss of exon 11
--gtaatacatt-tgcagcttgcggt-aatgtttttgtcatattcacatatagttgtgcttcaatctttgtttctcatcctgcagCTGCTTTTAATGAAAAGAGGAGGCCAGATCATATACTCTGGGCCACTGGGTAGGAACTCACATAAAGTTGTTGAATACTTTGAG
   || |  | | |  |  ||    | ||  ||  ||   || |  |   | |||        |||||  ||| ||| | ||||| || |  || | ||||||||||||||| | ||||| ||||| ||| ||||||  || || |||||||||||||| |||||||||
gtatagtctactgtatacattattttcaaaattactgctttact-gctctttgttaattgaagatcttgatttttcaccatgcagTTGTTGCTACTAAAAAGAGGAGGCCAGGTTATATATTCTGGACCATTGGGTACAAATTCTCATAAAGTTGTTGAGTACTTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttgtcatattcacatatagttgtgcttcaatctttgtttctcatcctgcagCTGCTTTTAATGAAAAGAGGAGGCCAGATCATATACTCTGGGCCACTGGGTAGGAACTCACATAAAGTTGTTGAATACTTTGAG
                                  tctttgtttctcatcc  CT-rich tract
                 atatagtt  TA-rich tract