1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtgtcagaagttcatttgaaattactgcagattttttctttgttaaatttctgtatccttctaaccctgaaatttcaacttgttcagCAGGCCGCTCAAAACTGGAGCTATAGAATTTTGGGGAGAGAGAAAGCTGTTTCTTCCTGACAAAGAATTCAATTATCCTTAAGTTGACTGAACATTTAAC
species | Vitis vinifera |
transcript | Vv18s0001g08600.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCAAATGGGATTTGATTCTAACCCATCTAGCAACAATCTGGGAACAAATG CAGGCCGCTCAAAACTGGAGCTATAGAATTTTGGGGAGAGAGAAAGCTGTTEST: gi|34547607|gb|CF515839.1|CF515839
genomic: CCAAATGGGATTTGATTCTAACCCATCTAGCAACAATCTGGGAACAAATGgtaagtgtca ... acttgttcagCAGGCCGCTCAAAACTGGAGCTATAGAATTTTGGGGAGAGAGAAAGCTGTT
EST: CCAAATGGGATTTGATTCTAACCCATCTAGCAACAATCTGGGAACAAATG CAGGCCGCTCAAAACTGGAGCTATAGAATTTTGGGGAGAGAGAAAGCTGTTEST: gi|349819168|gb|FQ412062.1|FQ412062
genomic: CCAAATGGGATTTGATTCTAACCCATCTAGCAACAATCTGGGAACAAATGgtaagtgtca ... acttgttcagCAGGCCGCTCAAAACTGGAGCTATAGAATTTTGGGGAGAGAGAAAGCTGTT
EST: CCAAATGGGATTTGATTCTAACCCATCTAGCAACAATCTGGGAACAAATG CAGGCCGCTCAAAACTGGAGCTATAGAATTTTGGGGAGAGAGAAAGCTGTTEST: gi|351053379|gb|FQ455715.1|FQ455715
genomic: CCAAATGGGATTTGATTCTAACCCATCTAGCAACAATCTGGGAACAAATGgtaagtgtca ... acttgttcagCAGGCCGCTCAAAACTGGAGCTATAGAATTTTGGGGAGAGAGAAAGCTGTT
EST: CCAAATGGGATTTGATTCTAACCCATCTAGCAACAATCTGGGAACAAATG CAGGCCGCTCAAAACTGGAGCTATGGAATTTTGGGGAGAGAGAAAGCTGTT
genomic: CCAAATGGGATTTGATTCTAACCCATCTAGCAACAATCTGGGAACAAATGgtaagtgtca ... acttgttcagCAGGCCGCTCAAAACTGGAGCTATAGAATTTTGGGGAGAGAGAAAGCTGTT
tttttctttgttaaatttctgtatccttctaaccctgaaatttcaacttgttcagCAGGCCGCTCAAAACTGGAGCTATAGAATTTTGGGGAGAGAGAAAGCTGTTTCTTCCTGACAAAGAATTCAATTATCCTTAAGTTGACTGAACATTTAAC
ttctaac putative branch site (score: 1)
cttgttc putative PPT
tttgttaaatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtcagaagttcatttgaaattactgcagattttttctttgttaaatttctgtatccttctaaccctgaaatttcaacttgttcagCAGGCCGCTCAAAACTGGAGCTATAGAATTTTGGGGAGAGAGAAAGCTGTTTCTTCCTGACAAAGAATTCAATTATCCTTAAGTTGACTGAACATTTAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA