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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGACAATTCTAGCAATGGAGAAGCTCCTAAAGAAAATTACATTCACGTGAGGGCCAGAAGGGGCCAGGCGACTAATAGTCACAGCCTTGCTGAAAGGgtatcttcttgctattatgcattaaatgttatgaaagacctctgctttctgatgtatcttgaacctagatgttttatgtttgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g08600.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g08600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G10180.1 (Glycine max), 5'ss of exon 2
TAAAGACAATTCTAGCAATGGAGAAGCTCCTAAAGAAAATTACATTCACGTGAGGGCCAGAAGGGGCCAGGCGACTAATAGTCACAGCCTTGCTGAAAGGgtatcttcttgctattatgcattaaatgttatga---------aagacctctgctttctgatgtatcttgaacc-tagatgttttatgtttgcag
  |  ||||||||   | |||||||||||| |||||||||| |||||||||||| || ||||| || ||||| || ||||| ||||||||||| ||||| ||| | ||   ||||     | ||  ||||||||         || | | ||  ||| |  ||||| |  ||   || |  |||| || ||||||
AGACAACAATTCTCAAAGTGGAGAAGCTCCCAAAGAAAATTTCATTCACGTGAGAGCTAGAAGAGGTCAGGCCACAAATAGCCACAGCCTTGCAGAAAGAgtaccatcc--ctatctcaaaatatttgttatgataaagttagaaaatccctttttttttttgtatgtctaatgatacaacttttttgcttgcag

upper sequence: Vv18s0001g08600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA0041S00210.1 (Glycine max), 5'ss of exon 2
---------------------------------------------------TAAAGACAATTCTAGCAATGGAGAAGCTCCTAAAGAAAATTACATTCACGTGAGGGCCAGAAGGGGCCAGGCGACTAATAGTCACAGCCTTGCTGAAAGGgtatcttcttgctattat-gcattaaatgttatgaaaga--------cctctgctttctgatgtatcttgaacctagatgttttatgtttgcag
                                                    ||  | ||||||   | |||||||||||| |||||||||| |||||||||||| || ||||| || || || ||||| || ||||||||||| ||||| ||| | ||    | | |   |  ||  || ||||| | |         | ||  ||| || ||||| |  ||         ||| || | ||||
GAATAATGGCGCAGATGTGCGTGGCAAGCAATCAGTGAAGCAAGCTAAAGACAACAATAATTCTCAAAGTGGAGAAGCTCCCAAAGAAAATTTCATTCACgtgagagctagaagaggtcaagccactaacagccacagccttgcagaaagagtaccatccctatctcaccacgatatttgctatgagaaagttagaaaacccttttttttgttgtatgtctaatgatacaactttttgctcgcag

upper sequence: Vv18s0001g08600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G05090.1 (Glycine max), 5'ss of exon 4
TAAAGACAATTCTAGCAATGGAGAAGCTCCTAAAGAAAATTACATTCACGTGAGGGCCAGAAGGGGCCAGGCGACTAATAGTCACAGCCTTGCTGAAAGGgtatcttcttgctattatgcattaaatgttatgaa-agacctctgctttctgatg-tatcttgaaccta-gatgttttatgtttgcag
 |||||  | ||    | || ||||| | | |||||||||| |||||| ||||| ||| |||| || || || || || |||||||||||||| ||||||||| |      || | |  ||||||   |||| |  |||   | ||||| |  || ||  ||  |  ||  |   ||| |||||||||
GAAAGATGACTCCGAGAGTGAAGAAGGTTCCAAAGAAAATTTCATTCATGTGAGAGCCCGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGgtaaccatcatct-taacacattaatgtttattactagaaacccgctttttattgataaattagagttataacactttttgtttgcag

upper sequence: Vv18s0001g08600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G10120.1 (Arabidopsis thaliana), 5'ss of exon 2
TAAAGACAATTCTAGCAATGGAGAAGCTCCTAAAGAAAATTACATTCACGTGAGGGCCAGAAGGGGCCAGGCGACTAATAGTCACAGCCTTGCTGAAAGGgtatcttcttgctattatgcattaaatgttatgaaagac----ctctgctttctgatgtat-cttgaacctagatgttttatgtttgcag-------------
 || || |  ||    | || |||||| || |||||||| ||||||||  ||||||| ||||| || || || |||||||||||||| ||||| ||  |||||    ||   |    || || | |  |||||| |  |    || || ||||||     | || |  |  ||| ||||  | |||                 
CAAGGAGAGCTCACAAAGTGAAGAAGCACCGAAAGAAAACTACATTCATATGAGGGCAAGAAGAGGTCAAGCCACTAATAGTCACAGTCTTGCAGAGCGGgtaaggactcttttacctgtat-atagattatgagaatctgctctttgttttctgccaattactggtgctgagaagtttgctatttcttttgttgttttgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161708702|gb|FC059231.1|FC059231
EST:     TGAGGGCCAGAAGGGGCCAGGCGACTAATAGTCACAGCCTTGCTGAAAGG                         GTCAGAAGAGAAAAGATCAGTGAGCGTATGAGACTGCTTCAAGAACTTGTT
genomic: TGAGGGCCAGAAGGGGCCAGGCGACTAATAGTCACAGCCTTGCTGAAAGGgtatcttctt ... atgtttgcagGTCAGAAGAGAAAAGATCAGTGAGCGTATGAGACTGCTTCAAGAACTTGTT
EST: gi|349819168|gb|FQ412062.1|FQ412062
EST:     TGAGGGCCAGAAGGGGCCAGGCGACTAATAGTCACAGCCTTGCTGAAAGG                         GTCAGAAGAGAAAAGATCAGTGAGCGTATGAGACTGCTTCAAGAACTTGTT
genomic: TGAGGGCCAGAAGGGGCCAGGCGACTAATAGTCACAGCCTTGCTGAAAGGgtatcttctt ... atgtttgcagGTCAGAAGAGAAAAGATCAGTGAGCGTATGAGACTGCTTCAAGAACTTGTT
EST: gi|351053379|gb|FQ455715.1|FQ455715
EST:     TGAGGGCCAGAAGGGGCCAGGCGACTAATAGTCACAGCCTTGCTGAAAGG                         GTCAGAAGAGAAAAGATCAGTGAGCGTATGAGACTGCTTCAAGAACTTGTT
genomic: TGAGGGCCAGAAGGGGCCAGGCGACTAATAGTCACAGCCTTGCTGAAAGGgtatcttctt ... atgtttgcagGTCAGAAGAGAAAAGATCAGTGAGCGTATGAGACTGCTTCAAGAACTTGTT