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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaatgtcatgttttgctagaataaatgtggaaatgaatcaatcacattatcacattccttttttcggtttagtgaatgccatgatattcatgttagttttcctcttgcatagATTCTTAATTCACGGGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGAATGAGCTCTTCTCATCCTTACCCGCATGGAATTTCCCAGGGAACCTTGC

Basic information

species Vitis vinifera
transcript Vv18s0001g08600.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110389345|gb|EC954174.1|EC954174
EST:     CTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGAT                         ATTCTTAATTCACGAGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGA
genomic: CTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGATgtaagttaat ... tcttgcatagATTCTTAATTCACGGGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGA
EST: gi|349819168|gb|FQ412062.1|FQ412062
EST:     CTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGAT                         ATTCTTAATTCACGAGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGA
genomic: CTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGATgtaagttaat ... tcttgcatagATTCTTAATTCACGGGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGA
EST: gi|351053379|gb|FQ455715.1|FQ455715
EST:     CTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGAT                         ATTCTTAATTCACGAGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGA
genomic: CTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGATgtaagttaat ... tcttgcatagATTCTTAATTCACGGGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttcggtttagtgaatgccatgatattcatgttagttttcctcttgcatagATTCTTAATTCACGGGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGAATGAGCTCTTCTCATCCTTACCCGCATGGAATTTCCCAGGGAACCTTGC
                                   ttagttttcctctt  CT-rich tract
                       atgatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttaatgtcatgttttgctagaataaatgtggaaatgaatcaatcacattatcacattccttttttcggtttagtgaatgccatgatattcatgttagttttcctcttgcatagATTCTTAATTCACGGGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGAATGAGCTCTTCTCATCCTTACCCGCATGGAATTTCCCAGGGAACCTTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA