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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTGTCAATGAAACTTGCCACTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGATgtaagttaatgtcatgttttgctagaataaatgtggaaatgaatcaatcacattatcacattccttttttcggtttagtgaatgccatgatattcatgttagttttcctcttgcatag

Basic information

species Vitis vinifera
transcript Vv18s0001g08600.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g08600.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA0041S00210.1 (Glycine max), 5'ss of exon 5
---------------------------TTTCTGTCAATGAAACTTGCCACTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGATgtaagttaatgtcatgttttgctagaataaat--gtggaaatgaatcaatcacattatcacattccttttttcggtttagtgaatgccatgat-attcatgttagttttcctcttgcatag
                           |||||||| |||||||||||||| || || |||||||||||| ||||| ||||  |  | ||||| || ||||||||| || ||| |  | | ||||    | |   |     | ||   || | | ||  | | |    |||    |  | |  || |    || |  |||                     
TCAACTTATCAAAGAGATATTTTGCAGTTTCTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAACTTTGATGTAGACAGGATCCTATCCAAGGATgtaagtgaaggtcttaatcttctaggtccatttactattttttaacacattaaactaagataatttcatttctcttcaattagattctccaatcacgcat---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110389345|gb|EC954174.1|EC954174
EST:     CTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGAT                         ATTCTTAATTCACGAGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGA
genomic: CTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGATgtaagttaat ... tcttgcatagATTCTTAATTCACGGGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGA
EST: gi|349819168|gb|FQ412062.1|FQ412062
EST:     CTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGAT                         ATTCTTAATTCACGAGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGA
genomic: CTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGATgtaagttaat ... tcttgcatagATTCTTAATTCACGGGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGA
EST: gi|351053379|gb|FQ455715.1|FQ455715
EST:     CTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGAT                         ATTCTTAATTCACGAGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGA
genomic: CTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGATgtaagttaat ... tcttgcatagATTCTTAATTCACGGGGTGGCAGTACATCTGTTCTTGGGTTTGGTCCAGGA