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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTATTGCTGCTACCCCAATTGAAATGCCAATTGATCCAGTGGATGGAATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgcattgtttaacactttttatggttattgtcatctttccccttcatatactaatttccatttagctaagaatgtgcccctggacactttctgtttagtttaaaataaagtcattttgtcctaaattcttctggtatgttttgggtttggtgttag

Basic information

species Vitis vinifera
transcript Vv14s0066g02630.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g02630.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G38670.1 (Glycine max), 5'ss of exon 4
GATGTATTGCTGCTACCCCAATTGAAATGCCAATTGATCCAGTGGATGGAATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgcattgtttaacactttttatggttattgtcatctttccccttcatatactaatttccatttagctaagaatgtgcccctggacactttctgtttagtttaaaataaagtcattttgtcctaaattcttctggtatgttttgggtttggtgttag
|||| |||||||| || |||||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||| |  ||||| ||| | |||||||||| | | |   |||  |||   | || |     ||| || | ||         |||  ||||| ||||    | |   | ||       |   ||  |    | |  |  | |     ||    ||   ||   |  | || | |   |             
GATGCATTGCTGCCACTCCAATTGAAATGCCCATTGATCCTGTGGAAGGCATTCCACTTGAAATGCCTCTTGTTTACTATTATGGGCACGCGACTCCTAGgtgattagtgatgt--aacttctattttaa--gttggcaacatt---------atataaattttcattggtttgaacttttg-----aaatcattggtagcaaatgaaggaaatgaaaatccaatcaccaaacgtatttgtttttgcag-------------

upper sequence: Vv14s0066g02630.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G43930.1 (Glycine max), 5'ss of exon 4
GATGTATTGCTGCTACCCCAATTGAAATGCCAATTGATCCAGTGGATGGAATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgcattgtttaacactttttatggttattgtcatctttccccttcatatactaatttccatttagctaagaatgtgcccctggacactttctgtttagtttaaaataaagtcattttgtcctaaattcttctggtatgttttgggtttggtgttag
|||| ||||| || || ||||| |||||||| |||||||| ||||| |||||||| |||||||||||||||||||| || || || ||  ||||||| |||| | | |   ||||    |||| |  |    |||| ||   ||         |||  || || ||||    | |        |  |  | |   |  ||   |  | ||| ||| |||          | || || | | |                    
GATGCATTGCCGCCACTCCAATAGAAATGCCCATTGATCCCGTGGAAGGAATTCCACTTGAAATGCCTCTTGTTTACTTTTACGGGCATGCAACTCCAAGgtgattagtgatgtt----acttctattaaaaattggcaaaatt---------atataaactttcattggtttgaa-------cttttaaaatcattggtactgcatgaaagaaaatcacccaacat--atttgtttttgcag-------------------

upper sequence: Vv14s0066g02630.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G07820.1 (Glycine max), 5'ss of exon 5
GATGTATTGCTGCTACCCCAATTGAAATGCCAATTGATCCAGTGGATGGAATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgcattgtttaacactttttatggttattgtcatctttccccttcatatactaatttccatttagctaagaatgtgcccctggacactttctgtttagtttaaaataaagtcattttgtcctaaattcttctggtatgttttgggtttggtgttag
 ||| ||||| || || |||||||||||| |||| ||||  ||||| || ||||| |||||||||||||||||||| |  ||||| ||||| |||||||||| | | |   |||        ||||| |                                                                                                                                     
AATGCATTGCCGCCACTCCAATTGAAATGTCAATCGATCTTGTGGAAGGCATTCCACTTGAAATGCCTCTTGTTTACTATTATGGGCACACGACTCCTAGgtgattagtgatgtaacttctattttaag-------------------------------------------------------------------------------------------------------------------------------------

upper sequence: Vv14s0066g02630.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G04680.1 (Arabidopsis thaliana), 5'ss of exon 5
GATGTATTGCTGCTACCCCAATTGAAATGCCAATTGATCCAGTGGATGGAATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgcattgtttaacactttttatggttattgt-catctttccccttcatatactaatttccatttagctaagaatgtgcccctggacactttctgtttagtttaaaataaagtcattttgtcctaaattcttctggtatgttttgggtttggtgttag
||| |||||||||| |||| |||||||||||| | |||||||| || ||  |||||||||| ||| | |||||||| | ||| |||||| || | || | |||| |       | | | | || |  |    ||  | | |  |||||||  ||  |  |||||  || |  |||     |  | |   |                                                                         
GATCTATTGCTGCTGCCCCTATTGAAATGCCACTGGATCCAGTTGAAGGGTTTCCTCTTGATATGGCCCTTGTTTACTACTACGGCCACGCATCACCAAAgtaagtgat----tctcaaatttctcctacccatcatacgttattcccctcgatg-aggaatttaaatatgtctactttggctctctcag-------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351053969|gb|FQ441735.1|FQ441735
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|351048068|gb|FQ441240.1|FQ441240
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|351037774|gb|FQ464215.1|FQ464215
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTCGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|22013971|gb|BQ799005.1|BQ799005
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|352791526|gb|FQ481105.1|FQ481105
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|351044652|gb|FQ443183.1|FQ443183
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|351053260|gb|FQ459128.1|FQ459128
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|161715992|gb|FC068763.1|FC068763
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|110422874|gb|EC989207.1|EC989207
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|352789973|gb|FQ479583.1|FQ479583
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|351046157|gb|FQ442535.1|FQ442535
EST:     ATTCCTCCTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|351037634|gb|FQ462618.1|FQ462618
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|351039234|gb|FQ457909.1|FQ457909
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|351042381|gb|FQ442848.1|FQ442848
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|351056907|gb|FQ443534.1|FQ443534
EST:     ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
EST: gi|110731309|gb|EE105610.1|EE105610
EST:     ATCCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAG                         TGCCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT
genomic: ATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgca ... ttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACT