Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTGTATAGTTTTGGAGTTGTTCTGTTAGAGCTTCTAACTGGGAGAAAACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttttcttctttttctgcctatttgcttaaaagccttttgttcacccagtgcctttcaagtttctctactccaaattgcttttctttgatatatatctataatctaaagtgaacatttctcatcttag

Basic information

species Vitis vinifera
transcript Vv05s0124g00360.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0124g00360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os09g33860.1 (Oryza sativa), 5'ss of exon 6
TGATGTGTATAGTTTTGGAGTTGTTCTGTTAGAGCTTCTAACTGGGAGAAAACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttttcttctttttctgcctatttgcttaaaagccttttgttcacccagtgcctttcaagtttctctactccaaattgcttttctttgatatatatctataatctaaagtgaacatttctcatcttag
|||||| ||||||||||||||||||||  ||||||||||||| || || ||||| || ||||| || |||||| | || || || |||||||| || |||||  |  |||| ||       ||   |||| ||  ||    |    |     | ||     |||  | |   ||     |       ||  |||||| | |||   | |||                       
TGATGTATATAGTTTTGGAGTTGTTCTTCTAGAGCTTCTAACAGGAAGGAAACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTGGTTACATGGgtaagcattttatt-------tgtaaatttactacaatatttaacatgagagctgtttgcctcagctattggtaaaaggagaattactttgttgata-agatc---actct-----------------------

upper sequence: Vv05s0124g00360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g67340.1 (Oryza sativa), 5'ss of exon 6
TGATGTGTATAGTTTTGGAGTTGTTCTGTTAGAGCTTCTAACTGGGAGAAAACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgg-gtt----------ttttcttctttttctgcctatttgcttaaaagc-cttttgttcacccagt---gcctttca-agtttctctactccaaa--ttgctt-------ttctttgatatatatctataatctaaagtgaacatttctcatcttag-------------------------------
|||||||||||| || ||||||||||| || || ||||| || || |||||||| || |||||||| |||||| | || || || ||  |||| || |||||   |||          ||| ||  ||| |||     ||   || | | | | | ||   | |   |   ||   | | ||| |||  | |  | |  ||| ||       |      |||   | |   |  ||  ||||   | || | | ||                                  
TGATGTGTATAGCTTCGGAGTTGTTCTCTTGGAACTTCTGACAGGAAGAAAACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGGgtaatgttcaccatatagtttactcatttatcttgtcgttaagttcagatcacatctgaatatctgatttagcagcttatagtgtctacagttaacaccttgattagtacaatgtagcaatacgcagcccaatcctttagtggctactttttacctagttctctgagcatgtctcagttctgttttgcag

upper sequence: Vv05s0124g00360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G153945_T03 (Zea mays), 5'ss of exon 6
TGATGTGTATAGTTTTGGAGTTGTTCTGTTAGAGCTTCTAACTGGGAGAAAACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttttcttctttttctgcctatttgcttaaaagccttttgttcacccagtgcctttcaagtttctctactccaaattgcttttctttgatatatatctataatctaaagtgaacatttctcatcttag
|||||| ||||||||||| ||||| || ||||||||||| ||||| || |||||||| |||||||| |||||  | || || || ||||| || || |||||  |  ||    | ||  |    | |||  || ||     ||||    |  ||||   |  ||  | || | |     |||| |         || ||||  |                              
TGATGTATATAGTTTTGGGGTTGTCCTTTTAGAGCTTCTTACTGGAAGGAAACCTGTAGATCATACAATGCCAAGGGGCCAGCAGAGTCTTGTTACTTGGgtatgaattaaaattttcatactaccatt--ctcaatgatgttttaa--aatcagtttttgccatttctcccgaac---aattaccgacaagctatttatacatgct---------------------------

upper sequence: Vv05s0124g00360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G029530_T01 (Zea mays), 5'ss of exon 6
TGATGTGTATAGTTTTGGAGTTGTTCTGTTAGAGCTTCTAACTGGGAGAAAACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttttcttctttttctgcctatttgcttaaaagccttttgttcacccagtgcctttcaagtttctctactccaaattgcttttctttgatatatatctataatctaaagtgaacatttctcatcttag
|||||| ||||| ||||| |||||||| |||||||||||||| || || ||||| || |||||||| |||||| | || || || |||||||| || |||||  |  |||| |||         ||   | |  | |||||| || |||| |    |  |||||    |   | | |     |||||| || |||| | ||| ||| || ||||                    
TGATGTATATAGCTTTGGGGTTGTTCTTTTAGAGCTTCTAACAGGAAGGAAACCAGTAGATCATACAATGCCTAGAGGTCAGCAGAGTCTGGTTACATGGgtaagcattttgttc---------ctgagtcccaacaagcctattattcaacttaagaatttcag--ctggttgcccg----tgctttgctatgatttttatatatcatataaat-------------------

upper sequence: Vv05s0124g00360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G44210.1 (Glycine max), 5'ss of exon 7
TGATGTGTATAGTTTTGGAGTTGTTCTGTTAGAGCTTCTAACTGGGAGAAAACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggt-tttttcttctttttctgcctatttgcttaaaagccttttgttcacccagtgcctttcaagtttctctactccaaattgcttttctttgatatatatctataatctaaagtgaacatttctcatcttag
|||||| ||||||||||| || |||||  | |||||||| ||||| |||||||||||||| |||||||||||| | ||||| || ||||| ||||| |||||  || |  | |||    |  | |||  | |||     |  |||   |||   |   |       | || ||  |   | ||    |||  |||||||  || | |  | ||                      
TGATGTCTATAGTTTTGGTGTGGTTCTTCTTGAGCTTCTTACTGGCAGAAAACCTGTTGACCATACCATGCCTAGAGGACAGCAGAGTCTTGTCACATGGgtcagtgtgctgcttaaactcatacctcatcgct--gctgtttttcaatcatttaccact------ggttgtcagccatagata---ttttgttgatattgatattttttgtag---------------------

upper sequence: Vv05s0124g00360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G38980.1 (Glycine max), 5'ss of exon 7
TGATGTGTATAGTTTTGGAGTTGTTCTGTTAGAGCTTCTAACTGGGAGAAAACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgt--gggttttttcttctttttctgcct-atttgcttaaaagccttttgttcacccagtgcctttcaagtttctctactccaaattgcttttctttgatatatatctataatctaaagtgaacatttctcatcttag
|||||| ||||||||||| ||||||||  | |||||||| || || |||||||||||||| |||||||||||| | ||||| || ||||| ||||| |||||  | || | | |||    |  | ||| ||  |       || |||   |||   |   |   |     |   | |     | ||  ||  | ||||||| | | | ||                           
TGATGTCTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGACCATACCATGCCTAGAGGACAGCAGAGTCTTGTCACATGGgtcagtgtgtctgcttaaactcatacctcatccgtgctgctgcttttcaatcatttaacactggttg---tcggccataggtattttgttgacattgatatttttttgtag--------------------------

upper sequence: Vv05s0124g00360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 5
TGATGTGTATAGTTTTGGAGTTGTTCTGTTAGAGCTTCTAACTGGGAGAAAACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttttcttctttttctgcctatttgcttaaaagccttttgttcacccagtgcctttcaagtttctctactccaaattgcttttctttgatatatatctataatctaaagtgaacatttctcatcttag
|||||| || |||||||||||||| || || || ||||| || ||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||| |||||    ||    | |||  | || || |||  ||   || ||             |   ||  || |||||||     ||||    | ||                                            
TGATGTTTACAGTTTTGGAGTTGTGCTTTTGGAACTTCTTACCGGGAGAAAACCGGTTGATCATACTATGCCTCGTGGTCAACAGAGTCTTGTCACTTGGgta--cttaacttacttaatttgactctttctttctgagactaccaaatcttttcttggttataactttctctgt---aaatctaatatccag-----------------------------------------

upper sequence: Vv05s0124g00360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G59350.1 (Arabidopsis thaliana), 5'ss of exon 4
TGATGTGTATAGTTTTGGAGTTGTTCTGTTAGAGCTTCTAACTGGGAGAAAACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttttcttctttttctgcctatttgcttaaaagccttttgttcacccagtgcctttcaagtttctctactccaaattgcttttctttgatatatatctataatctaaagtgaacatttctcatcttag
|||||| ||||||||||| || || || || |||||  | ||||| || ||||| || |||||||| ||||||||||| ||||||||||| || || |||||  ||  |     | | ||      |||| || |  |   | ||  |  |   |    |    | | |   |          |  ||   || |                                       
TGATGTTTATAGTTTTGGTGTGGTGCTTTTGGAGCTCTTGACTGGTAGGAAACCCGTCGATCATACGATGCCTCGTGGTCAACAAAGTCTTGTTACTTGGgttagtactaaaaccatgttgctttaattttctgaggataatcttactttc---gaatttactgattgttcttggcatttgccgtcttaacttcag--------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110361162|gb|EC924615.1|EC924615
EST:     AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG                         GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: gi|110418740|gb|EC984911.1|EC984911
EST:     AACCAGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG                         GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: gi|110363425|gb|EC927009.1|EC927009
EST:     AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG                         GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: gi|110400981|gb|EC967571.1|EC967571
EST:     AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG                         GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: gi|110720824|gb|EE097082.1|EE097082
EST:     AACCTGTTGATCATACCATGCCTCGTAAACAACAGAGTCTGGTCACCTGG                         GCTACTCCTAGGA-TGAGTGGAGACGAAGTTANACGATGTGTAGATCCC
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAG-ACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCC
EST: gi|156738849|gb|EV242970.1|EV242970
EST:     AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGN                         GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: gi|110380468|gb|EC945736.1|EC945736
EST:     AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG                         GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: gi|30302005|gb|CB978799.1|CB978799
EST:     AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG                         GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: gi|161714633|gb|FC064223.1|FC064223
EST:     AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG                         GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA