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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaatgcaactttattgaatttattaggagttgatctcctaagtttctgcgatcatgcaatccaattcatagtcatctggtttcttttctccccccctcatacatgagtaacatgatgttctctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGTTATTGTGTGGACGGAAACCTCCGTGTGTTGGCATACGAGTTTGCAACCA

Basic information

species Vitis vinifera
transcript Vv05s0124g00360.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0124g00360.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G38980.1 (Glycine max), 3'ss of exon 4
gtacaaatgcaactttattgaatttattaggagttgatctcctaagtttctgcgatcatgcaatccaattcatagtcatctggtttcttttctccccccctcatacatgagtaacatgatgttctctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGTTATTGTGTGGACGGAAACCTCCGTGTGTTGGCATACGAGTTTGCAACCA
                                                                          ||     | |   | || ||      |    | |   | |     ||||||||  |||||||||||||||| |||||||||||| | || ||| | |||||||||| |||||| ||||| || ||||| || |||||  | ||||| |||||||| || |
--------------------------------------------------------------------------gtttctagatggttgttgtcagtttattggtcgtc--tcattcagtgttctctatttcagGTTTCCATGGTCTCAAGATTGAAGGATGACAATTTTGTTGAGTTGCATGGTTACTGTGTTGAAGGAAATCTTCGTGTACTTGCATATGAGTTTGCTACTA

upper sequence: Vv05s0124g00360.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G44210.1 (Glycine max), 3'ss of exon 4
gtacaaatgcaactttattgaatttattaggagttgatctcctaagtttctgcgatc-atgcaatccaattc--atagtcatctggtttcttttctccccccctcatacatgagtaacatgatgttctctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGTTATTGTGTGGACGGAAACCTCCGTGTGTTGGCATACGAGTTTGCAACCA
        ||||   | |    |  | ||  |  | | |    ||  |  |   ||  || || | ||| |   |||||    || |   | || ||      |  |    |  | |     ||||||||  |||||||||||||||| |||||||||||| | |  ||| | |||||||||| |||||| ||||| || ||||| || |||||  | ||||| |||||||| || |
--------gcaagcctctgctgtcaacta--aactaaac----aaactattataatttatacactgcaagtatgatagtttcttgatggttgttgtcagtttttggt---cgtctcatgcattgttctctatttcagGTTTCCATGGTCTCAAGATTGAAGAATGGCAATTTTGTTGAGTTGCATGGTTACTGTGTTGAAGGAAATCTTCGTGTACTTGCATATGAGTTTGCTACTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161709819|gb|FC058898.1|FC058898
EST:     NNCTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAG                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: AACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
EST: gi|110385254|gb|EC949761.1|EC949761
EST:     NNCTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAG                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: AACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
EST: gi|110730792|gb|EE108276.1|EE108276
EST:     NNCTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAG                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: AACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
EST: gi|110361162|gb|EC924615.1|EC924615
EST:     NNCTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAG                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: AACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
EST: gi|110418740|gb|EC984911.1|EC984911
EST:     ATTTTTAACTCAG                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: ATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
EST: gi|110375235|gb|EC940201.1|EC940201
EST:     NNCTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAG                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: AACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
EST: gi|110702439|gb|EE081155.1|EE081155
EST:     NNCTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAA                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: AACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
EST: gi|110720824|gb|EE097082.1|EE097082
EST:     CTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAG                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: CTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
EST: gi|110686851|gb|EE063746.1|EE063746
EST:     NNCTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAG                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: AACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
EST: gi|156738849|gb|EV242970.1|EV242970
EST:     NNCTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAG                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: AACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
EST: gi|110698518|gb|EE076104.1|EE076104
EST:     NNCTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAG                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: AACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
EST: gi|110699258|gb|EE076097.1|EE076097
EST:     NNCTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAG                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: AACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
EST: gi|110698344|gb|EE075749.1|EE075749
EST:     NNCTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAG                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: AACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
EST: gi|161714633|gb|FC064223.1|FC064223
EST:     NNCTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAG                         GTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT
genomic: AACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGgtacaaatgc ... tctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggtttcttttctccccccctcatacatgagtaacatgatgttctctgcttcagGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGTTATTGTGTGGACGGAAACCTCCGTGTGTTGGCATACGAGTTTGCAACCA
                             gagtaac  putative branch site (score: 2)
                                          ttctctgcttc  putative PPT
     ttctttt  TA-rich tract