1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgcttttgttggatactcttacccaacctaattccactgtattaatttttatgctgatattctcctaatgttgtttttatttctgttttgggcaattcagGAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAAAGACAGCACCCCCTATTGAAGTACCTGAATTGTCTCTGGAAGAACTAAA
species | Vitis vinifera |
transcript | Vv05s0124g00360.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATG GAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAAEST: gi|110385254|gb|EC949761.1|EC949761
genomic: CCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATGgtatatttcc ... ggcaattcagGAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAA
EST: CCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATG GAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAAEST: gi|110730792|gb|EE108276.1|EE108276
genomic: CCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATGgtatatttcc ... ggcaattcagGAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAA
EST: CGAGCTCTTGAAAAGCCCCAGGAACCACACAGATG GAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAAEST: gi|110686851|gb|EE063746.1|EE063746
genomic: CGAGCTCTTGAAAAGCCCCAGGAACCACACAGATGgtatatttcc ... ggcaattcagGAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAA
EST: CCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATG GAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAAEST: gi|110698518|gb|EE076104.1|EE076104
genomic: CCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATGgtatatttcc ... ggcaattcagGAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAA
EST: CCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATG GAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAAEST: gi|110699258|gb|EE076097.1|EE076097
genomic: CCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATGgtatatttcc ... ggcaattcagGAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAA
EST: CCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATG GAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAAEST: gi|110698344|gb|EE075749.1|EE075749
genomic: CCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATGgtatatttcc ... ggcaattcagGAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAA
EST: CCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATG GAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAA
genomic: CCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATGgtatatttcc ... ggcaattcagGAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAA
tttttatgctgatattctcctaatgttgtttttatttctgttttgggcaattcagGAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAAAGACAGCACCCCCTATTGAAGTACCTGAATTGTCTCTGGAAGAACTAAA
tcctaat putative branch site (score: 2)
taatgttgtttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttttgttggatactcttacccaacctaattccactgtattaatttttatgctgatattctcctaatgttgtttttatttctgttttgggcaattcagGAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAAAGACAGCACCCCCTATTGAAGTACCTGAATTGTCTCTGGAAGAACTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - -ttgttgg
- - - - - - - - - - acccaac
- - - - - - - - - - - - - - - - tccactg
- - - - - - - - - - - - - - - - - - - - - - - - -tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctaa