1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgggttttttcttctttttctgcctatttgcttaaaagccttttgttcacccagtgcctttcaagtttctctactccaaattgcttttctttgatatatatctataatctaaagtgaacatttctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAACTAAAGGGAGAATATCCTCCGAAAGGAGTTGCTAAG
species | Vitis vinifera |
transcript | Vv05s0124g00360.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAAEST: gi|110418740|gb|EC984911.1|EC984911
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: AACCAGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAAEST: gi|110363425|gb|EC927009.1|EC927009
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAAEST: gi|110400981|gb|EC967571.1|EC967571
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAAEST: gi|110720824|gb|EE097082.1|EE097082
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: AACCTGTTGATCATACCATGCCTCGTAAACAACAGAGTCTGGTCACCTGG GCTACTCCTAGGA-TGAGTGGAGACGAAGTTANACGATGTGTAGATCCCEST: gi|156738849|gb|EV242970.1|EV242970
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAG-ACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCC
EST: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGN GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAAEST: gi|110380468|gb|EC945736.1|EC945736
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAAEST: gi|30302005|gb|CB978799.1|CB978799
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAAEST: gi|161714633|gb|FC064223.1|FC064223
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
EST: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGG GCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
genomic: AACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttt ... ctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAA
aattgcttttctttgatatatatctataatctaaagtgaacatttctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAACTAAAGGGAGAATATCCTCCGAAAGGAGTTGCTAAG
atctaaa putative branch site (score: 3)
tttctcatctt putative PPT
ttttctttgatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggttttttcttctttttctgcctatttgcttaaaagccttttgttcacccagtgcctttcaagtttctctactccaaattgcttttctttgatatatatctataatctaaagtgaacatttctcatcttagGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAACTAAAGGGAGAATATCCTCCGAAAGGAGTTGCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG