Sequence
atgc intronic sequence ATGC exonic sequenceTGGGAAAATAGCACTGCAGCAGTATGATGTGAATGCTATCGTTGATAGGCTTCTTCAATTTCTTGAGATGGAGAAGGACTATGTGACTGCTGAAACTCTGgtgaatttttacagctgtgcctagatgcttggatttttattgtgattgaatttgaacattgaaccaaactccaaaaaaatttatgctcttcatgcatagaagtaacatgagcatatgatttaactgttattaatcagattgatacaagtctggagttctctcatgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g03880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g43630.1 (Oryza sativa), 5'ss of exon 8
TGGGAAAATAGCACTGCAGCAGTATGATGTGAATGCTATCGTTGATAGGCTTCTTCAATTTCTTGAGATGGAGAAGGACTATGTGACTGCTGAAACTCTGgtgaatttttacagctgtgcctagatgcttggatttttattgtgattgaatttgaacattgaaccaaactccaaaaaaatttatgctcttcatgcatagaagtaacatgagcatatgatttaactgttattaatcagattgatacaagtctggagttctctcatgtag
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TGGGAAAATAGCGCTGCAGCAGTATGATGTGAATGCTATTGTTGACAGGCTTCTGCAATTCCTTGAAATGGACAAGGAATATGTGACGGCTGAAACTCTTgtaagtttttttgatagtattttaactgttcatcattcactaaggatgaagt---acattcaac-----tctgggtgtctttgt-----tcctgagtaaaa---acttaaatgtag----------------------------------------------------
upper sequence: Vv04s0008g03880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AC198725.4_FGT007 (Zea mays), 5'ss of exon 8
TGGGAAAATAGCACTGCAGCAGTATGATGTGAATGCTATCGTTGATAGGCTTCTTCAATTTCTTGAGATGGAGAAGGACTATGTGACTGCTGAAACTCTGgtgaatttttacagctgtgcctagatgcttggatttttattgtgattgaatttgaacattgaaccaaactccaaaaaaatttatgctcttcatgcatagaagtaacatgagcatatgatttaactgttattaatcagattgatacaagtctggagttctctcatgtag
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TGGAAAAATAGCACTGCAGCAGTATGATGTTAATGCTATTGTGGACAGGCTTCTACAATTTCTTGAAATGGATAAGGATTATGTGACTGCTGAAACTCTAgtaagtgtttgtaatg----ctagttact--gacctttactcatgatctattctaacaggattctgatttacacatgcag----------------------------------------------------------------------------------------
upper sequence: Vv04s0008g03880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G029077_T01 (Zea mays), 5'ss of exon 6
TGGGAAAATAGCACTGCAGCAGTATGATGTGAATGCTATCGTTGATAGGCTTCTTCAATTTCTTGAGATGGAGAAGGACTATGTGACTGCTGAAACTCTGgtgaatttttacagctgtgcctagatgcttggatttttattgtgattgaatttgaacattgaaccaaactccaaaaaaatttatgctcttcatgcatagaagtaacatgagcatatgatttaactgttattaatcagattgatacaagtctggagttctctcatgtag
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TGGAAAAATAGCACTGCAGCAGTATGATGTTAATGCCATTGTGGACAGGCTTCTACAATTTCTTGAAATGGATAAGGATTATGTGACTGCTGAAACTCTAgtaagtgtttgtaatgctagttactgatctttactcatgatctagtctagcaggattac-gatttacattccacttgtatcttgatgttttggatttaaaaataaaacgcag--------------------------------------------------------
upper sequence: Vv04s0008g03880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G08480.1 (Glycine max), 5'ss of exon 6
TGGGAAAATAGCACTGCAGCAGTATGATGTGAATGCTATCGTTGATAGGCTTCTTCAATTTCTTGAGATGGAGAAGGACTATGTGACTGCTGAAACTCTGgtgaatttttacagctgtgcctagatgcttggatttttat-tgtgattgaatttgaacattgaaccaaactccaaaaaaatttatgctcttcatgcatagaagtaacatgagcatatgatttaactgttattaatcagattgatac-aagtctgga-gttctctcatgtag
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TGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTCCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGgtaaacatgacaagtgcctgctagctaccctgaaatttgtgcttaagagtagtattgctttgttttatattatatgcaaacatgtgtt------gaaagtaag--gcattttgatttgacttagctatggtatggtagactaatgcgaagtttgaaagttcatttgttcag
upper sequence: Vv04s0008g03880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G08590.1 (Glycine max), 5'ss of exon 6
TGGGAAAATAGCACTGCAGCAGTATGATGTGAATGCTATCGTTGATAGGCTTCTTCAATTTCTTGAGATGGAGAAGGACTATGTGACTGCTGAAACTCTGgtgaatttttacagctgtgcctagatgcttggatttttat-tgtgattgaatttgaacattgaaccaaactccaaaaaaatttatgctcttcatgcatagaagtaacatgagcatatgatttaactgttattaatcagattgatac-aagtctgga-gttctctcatgtag
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TGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTCCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGgtaaacatgacaagtgcctgctagctaccctgaaatttgtgcttaagagtagtattgctttgttttatattatatgcaaacatgtgtt------gaaagtaag--gcattttgatttgacttagatatggtatggtagactaatgcgaagtttgaaagttcatttgttcag
upper sequence: Vv04s0008g03880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G11490.2 (Arabidopsis thaliana), 5'ss of exon 6
TGGGAAAATAGCACTGCAGCAGTATGATGTGAATGCTATCGTTGATAGGCTTCTTCAATTTCTTGAGATGGAGAAGGACTATGTGACTGCTGAAACTCTGgtgaatttttacagctgtgcctagatgcttggatttttattgtgattgaatttgaacattgaaccaaactccaaaaaaatttatgctcttcatgcatagaagtaacatgagcatatgatttaactgttattaatcagattgatacaagtctggagttctctcatgtag
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TGGAAAGATTGCTTTGCAACAGTATGATGTAAATGCGATTGTTGATAGACTTCTTCAATTTCTGGAGATGGAAAAGGACTATGTGACCGCTGAAACTTTGgtaaactatcat----------------ttgaactattcacggagatga--ttggccatcacattga-tacttatattgtttacatttt-----cataacaattccacttg--tctggttcctcttctag--------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161711481|gb|FC058683.1|FC058683EST: TTCTTCAATTTCTTGAGATGGAGAAGGACTATGTGACTGCTGAAACTCTG GTGCTTGTAAAAGATCTGCTAAGGAAATATCCACAATGGAGTCATGATTGC
genomic: TTCTTCAATTTCTTGAGATGGAGAAGGACTATGTGACTGCTGAAACTCTGgtgaattttt ... tctcatgtagGTGCTTGTAAAAGATCTGCTAAGGAAATATCCACAATGGAGTCATGATTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGAAAATAGCACTGCAGCAGTATGATGTGAATGCTATCGTTGATAGGCTTCTTCAATTTCTTGAGATGGAGAAGGACTATGTGACTGCTGAAACTCTGgtgaatttttacagctgtgcctagatgcttggatttttattgtgattgaatttgaacattgaaccaaactccaaaaaaatttatgctcttcatgcatagaagtaacatgagcatatgatttaactgttattaatcagattgatacaagtctggagttctctcatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA