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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGTTCTGAAATTATATCACATATCAGCTTCAACATGTGTTGATGCAGATTTTCCAGCAATTCTTAAGCATTTAATGCTTAATGATCAAGATACTCAAgtgaggtttcttttcttggagcaagttttcttcatttgtacgcttgtttaatgcttggtttagtattccattctccttagctattgcatatggttctgtt...

Basic information

species Vitis vinifera
transcript Vv04s0008g03880.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g03880.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G08590.1 (Glycine max), 5'ss of exon 2
TGCAGTTCTGAAATTATATCACATATCAGCTTCAACATGTGTTGATGCAGATTTTCCAGCAATTCTTAAGCATTTAATGCTTAATGATCAAGATACTCAAgtgaggtttcttttcttggagcaagttt-tcttca-tttgt-acgcttgtttaatgcttggtttagtattccattctcc-ttagctattgcatatggttctgtt
||  ||| ||||| ||||||| |||||| |||| || ||| |||||||||||||||||||||  || ||||||||| |||||||||| |  |||||||| |||||| |||| ||  ||  | || ||| ||||||   | | |    |  | |  | || ||| |   ||   |      |||    ||  |  | |  |    
TGGGGTTTTGAAACTATATCATATATCAACTTCCACCTGTATTGATGCAGATTTTCCAGCAACACTGAAGCATTTATTGCTTAATGACCCTGATACTCAGgtgaggattctatttctgtggaaattttatcttcaacctatgataaatcataacagtttcgttcaactttttgtaaagaattaagagtttaacttagaac----

upper sequence: Vv04s0008g03880.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G08480.1 (Glycine max), 5'ss of exon 2
TGCAGTTCTGAAATTATATCACATATCAGCTTCAACATGTGTTGATGCAGATTTTCCAGCAATTCTTAAGCATTTAATGCTTAATGATCAAGATACTCAAgtgaggtttcttttcttggagcaagttt--tcttcatttgt-acgcttgtttaatgcttggtttagtattccattctccttagctattgcatatggttctgtt
||  ||| ||||| ||||||| ||||||||||| || ||| ||||||| |||||||||||||  || ||||||||  |||||||||| |  ||| |||| |||||| |||| |   ||  | || |||   ||  ||   | |    |  | |  |||| ||| |   ||         |||    || ||  | |  |    
TGGGGTTTTGAAACTATATCATATATCAGCTTCCACCTGTATTGATGCTGATTTTCCAGCAACACTGAAGCATTTGTTGCTTAATGACCCTGATGCTCAGgtgaggattctatctgtgtggaaattttatcctcaatccatgataaatcataacagcttcgttcaacttttgtaaagaattaagagtttcacttagaacc---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713975|gb|EE090376.1|EE090376
EST:     ATTTTCCAGCAATTCTTAAGCATTTAATGCTTAATGATCAAGATACTCAA                         GTAGTTGCAAATTGTTTATCATCTCTACAAGAGATCTGGAGCTCAGAAACA
genomic: ATTTTCCAGCAATTCTTAAGCATTTAATGCTTAATGATCAAGATACTCAAgtgaggtttc ... tttttgtcagGTAGTTGCAAATTGTTTATCATCTCTACAAGAGATCTGGAGCTCAGAAGCA
EST: gi|110699549|gb|EE076646.1|EE076646
EST:     ATTTTCCAGCAATGCTTAAGCATTTAATGCTTAATGATCCAGATACTCAA                         GTAGTTGCAAATTGTTTATCATCTCTACAAGAGATCTGGAGCTCAGAAGCA
genomic: ATTTTCCAGCAATTCTTAAGCATTTAATGCTTAATGATCAAGATACTCAAgtgaggtttc ... tttttgtcagGTAGTTGCAAATTGTTTATCATCTCTACAAGAGATCTGGAGCTCAGAAGCA