Sequence
atgc intronic sequence ATGC exonic sequenceTACAAGAGATCTGGAGCTCAGAAGCAAGTACCTCTGAGGAAGCATCCAGGGAGAGAGAAGCTTTGCTTAGCAAGCCAGTGATATATTACTTTTTGAATCGgtatgttctttctcataggcattggaataaatcattatccatgccttggacactacatctttattaagaatggatgctttgctttgttgcatgtctttgtgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g03880.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G08480.1 (Glycine max), 5'ss of exon 3
TACAAGAGATCTGGAGCTCAGAAGCAAGTACCTCTGAGGAAGCATCCAGGGAGAGAGAAGCTTTGCTTAGCAAGCCAGTGATATATTACTTTTTGAATCGgtatgttctttctcataggcattggaataaatcattatccatgccttggacactacatctttattaagaatggatgctttgctttgttgcatgtctttgtgtag---
||||||| || |||| || ||| || || || ||||||||| |||||||||||||| || | |||||||||||||| |||||||| ||||||||||||| | ||||| | || | | ||| | | || ||||| | | | | ||||| | || | | | | || ||| |
TACAAGAAATTTGGACCTTAGAGTCATCCACATCAGAGGAAGCAGCCAGGGAGAGAGAAACTCTACTTAGCAAGCCAGTTGTATATTACCTTTTGAATCGgta-atcttttctta-agtctctctgatactttgatgaacactacttgggaaagatgtggtgcttaagt-----tatctttccctaaaggacagctctgttatgttc
upper sequence: Vv04s0008g03880.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G08590.1 (Glycine max), 5'ss of exon 3
TACAAGAGATCTGGAGCTCAGAAGCAAGTACCTCTGAGGAAGCATCCAGGGAGAGAGAAGCTTTGCTTAGCAAGCCAGTGATATATTACTTTTTGAATCGgtatgttctttctcataggcattggaataaatcattatcc-atgccttggacactacatctttattaagaatggatgctttgctttgttgcatgtctttgtgtag-------
||||||| || |||| || ||| || || || ||||||||| |||||||||||||| || | |||||||||||||| |||||||| || |||||||||| | ||||||| | ||| | | || || | ||| | || ||| |||| | ||||| ||| | || |
TACAAGAAATTTGGACCTTAGAGTCATCCACATCAGAGGAAGCAGCCAGGGAGAGAGAAACTCTACTTAGCAAGCCAGTTGTATATTACCTTCTGAATCGgta-atcttttctcaa-------gtaattccttgctctctgatactttgatgaacactacttgggaaagatgtggtgcttaa----gttatctttccctaaaggacatcact
upper sequence: Vv04s0008g03880.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G11490.1 (Arabidopsis thaliana), 5'ss of exon 3
TACAAGAGATCTGGAGCTCAGAAGCAAGTACCTCTGAGGAAGCATCCAGGGAGAGAGAAGCTTTGCTTAGCAAGCCAGTGATATATTACTTTTTGAATCGgtatgttctttctcataggcattggaataaatcattatccatgccttggacactacatctttattaagaatggatgctttgctttgttgcatgtctttgtgtag
| ||||| || ||||| | ||||||||| |||||||||||||| | |||| | || | ||||| ||||||||||| |||||||| || |||||||||||||| ||| | || || | | || | || || | ||| | | | | | || | |||| | | || ||
TTCAAGAAATTTGGAGTTTAGAAGCAAGCCACTCTGAGGAAGCATGCCGGGAAAAGGAGTCCTTGCTCAGCAAGCCAGTTATATATTATTTCTTGAATCGgtatgtactt------aagc-----------tcctccttcaactgtctatcagtataacttgttgttgtagtggtatttaccattgtggtgtttcactgcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699549|gb|EE076646.1|EE076646EST: GAGAGAGAAGCTTTGCTTAGCAAGCCAGTGATATATTACTTTTTGAATCG GATCAAGGAATTCAGTGAATGGGCACAGTGTCTCGTACTTGAGTTGGTCGC
genomic: GAGAGAGAAGCTTTGCTTAGCAAGCCAGTGATATATTACTTTTTGAATCGgtatgttctt ... ctttgtgtagGATCAAGGAATTCAGTGAATGGGCACAGTGTCTCGTACTTGAGTTGGTCGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACAAGAGATCTGGAGCTCAGAAGCAAGTACCTCTGAGGAAGCATCCAGGGAGAGAGAAGCTTTGCTTAGCAAGCCAGTGATATATTACTTTTTGAATCGgtatgttctttctcataggcattggaataaatcattatccatgccttggacactacatctttattaagaatggatgctttgctttgttgcatgtctttgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG