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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAAGAATAATCCGAATGATCGACGGATTATCCTCTCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttagtattaaagtggcttatttatatttcctttatcatttatgtctttgattacatttttcctttttcttcttgcag

Basic information

species Vitis vinifera
transcript Vv03s0038g04500.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 8
GATCAAGAATAATCCGAATGATCGACGGATTATCCTCTCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttagtattaaagtggct-tatttatatttcc----ttt---atcatttatgtctttgattacatttttcctttttcttcttgcag-----------------
|||||||||||||||  | ||| | || |||||||| || || ||||||||||| ||||||||   |||||| ||||| || ||||| ||||||||||| ||||||||   |||| || ||||| | ||  |    |||   |  | || | |   |  |   |  |||   ||    |  | ||                  
GATCAAGAATAATCCTGACGATAGGCGAATTATCCTATCTGCGTGGAATCCTTCAGATCTCAAGAAGATGGCCCTTCCTCCTTGCCACATGTTTGCACAAgttagtat---agtgcctctattttttttaacaaaatttgagaataattgtcttgctattggaaccttttacttgatataatacaatataatataatgcatcc

upper sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G139880_T01 (Zea mays), 5'ss of exon 7
GATCAAGAATAATCCGAATGATCGACGGATTATCCTCTCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttagtattaaagtggcttatttatattt---cctttatcatttatgtctttgattacatttttcc----tttttcttcttgcag-----------------
||| ||||| |||||  |||| || || || ||  | || || ||||||||||| ||||||||   |||||| ||||| || ||||| ||||||||||| ||||||||  || |    |  ||   ||     ||   | |  |||    |   ||  | ||||||    | |   | |||| |                  
GATTAAGAACAATCCTGATGACCGCCGAATAATTTTATCGGCGTGGAATCCTTCAGATCTCAAGAAGATGGCTCTTCCTCCTTGCCACATGTTTGCACAAgttagtat--aatttttctgcttgagttaaggtctaagttaactattggctcattttgacttttccatggtgtgcatccttgtactaatgcattctaacttt

upper sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G005990_T01 (Zea mays), 5'ss of exon 8
GATCAAGAATAATCCGAATGATCGACGGATTATCCTCTCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttagtat-------taaagtggctta--tttatatt--tcctttatcatttatgtctttgattacatttttcctt-----tttcttcttgcag------------------------------------------------------------------------------------
|||||||||| ||||  | || || || || ||  | || || ||||||||||| ||||||||   |||||| ||||| || ||||| ||||||||||| || |||||        |   ||| |||  || | |||  |  ||| | | || |   ||  | || | |  |         ||| ||||||                                                                                       
GATCAAGAATGATCCTGACGACCGTCGAATAATTTTGTCGGCGTGGAATCCTTCAGATCTCAAGAAGATGGCTCTTCCTCCTTGCCACATGTTTGCACAAgtcagtataatctgtcagcttggtttaagttgaaattagtttttttttacttttaaattacagtagactggtgaacataagttttttcttgataattatgtttttaacattgcttgcattttatttttgatctttttgtcaactaaaaacatttgcattcaacctatccaccttccag

upper sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G04480.1 (Glycine max), 5'ss of exon 8
GATCAAGAATAATCCGAATGATCGACGGATTATCCTCTCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttag------tattaaagtggcttatttata-----tttcctttatcatttatg-----tctttgattacatttttcctttttcttcttgcag
||| ||| ||||||| ||||||||| |||| || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||  |      ||||   ||  ||  ||   |      |  |||| ||  | |||     |  |  | | | ||||    |||| | | || ||
GATAAAGCATAATCCCAATGATCGAAGGATCATTCTCTCAGCGTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGgtccgcagctatatttgggtttctctttggaagagctctctctttttctctcatgaagttttgtcaacttccttttattgttttttccctgtag

upper sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G01240.1 (Glycine max), 5'ss of exon 8
GATCAAGAATAATCCGAATGATCGACGGATTATCCTCTCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttagta--ttaaagtggcttattt--------atatttcctttatcatttatgtctttgatt-acatttttcctttttc-ttcttgcag
||| ||| |||||||  ||||||| || ||||| ||||| || |||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||  | |  ||||    | || ||         ||    ||||   || ||||  |    ||| | ||||||  |||||   | ||||||
GATAAAGCATAATCCTGATGATCGGCGAATTATTCTCTCTGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGgtctgcagcttaattcaggtttttctttgaaaaattgccccttccacacttattccacatattgatatttttaatttttaacttttgcag

upper sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 7
GATCAAGAATAATCCGAATGATCGACGGATTATCCTCTCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttagtattaaagt---ggcttatttat------atttcctttatcatttatg-----tctttgattacatttttc---ctttttcttcttgcag
||| ||| | |||||  |||||||| |||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| ||  | |   |  |   || || | | |      | |  |||| ||  | |||     |  |||| | | ||||      ||||| ||| |||||
GATAAAGCACAATCCTGATGATCGAAGGATCATTCTCTCTGCTTGGAATCCATCTGATCTTAAGTTGATGGCACTTCCACCCTGCCACATGTTTGCACAAgtccgcagctatatttgggtttctctttggaagaactctctttttctctcatgaaattttgttgacttccttttattgttttttttttcctgcag

upper sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G01280.3 (Glycine max), 5'ss of exon 8
GATCAAGAATAATCCGAATGATCGACGGATTATCCTCTCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttagta--ttaaagtggcttatttat------atttcctttatcatttatgtctttgatt-acatttttcctttttc-ttcttgcag
||| |||  ||||||  ||||||| || || || ||||| || ||||||||    ||||| ||||| |||||||||||||||||||| ||||||||||||||  | |  ||||    | || ||  |      ||| ||  |  ||  |||  |    ||| | ||||||  |||||   | ||||||
GATAAAGCGTAATCCTGATGATCGGCGAATCATTCTCTCTGCATGGAATCCAGTGGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGgtctgcagcttaattcaggtttttctttgaaaaattgccccttccacatattccacctattgatatttttaatttttaacttttgcag

upper sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G16370.1 (Arabidopsis thaliana), 5'ss of exon 8
GATCAAGAATAATCCGAATGATCGACGGATTATCCTCTCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttagtattaaagtggcttatttatatttcctttatcattta-tgtctttgattacatttttcctttttcttcttgcag
 |||||||| |||||  ||||||| || |||||  | ||||||||||||||||||||||| ||  ||||||||||||| || ||||||||||||||||| || | |   |   |  ||| |   | | |  ||| || |  | ||  ||||||||| |||||  |||||    ||||||
AATCAAGAACAATCCTGATGATCGGCGTATTATAATGTCAGCTTGGAATCCTTCTGATCTTAAGCTGATGGCACTTCCTCCATGCCATATGTTTGCACAAgt-aatgccactttatcttctaattctgttgtttctcctacaatgagtttgattacttttttttttttt----ttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33405951|gb|CF211578.1|CF211578
EST:     CTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAG                         TTCTATGTAAGCCATGGGGAGTTATCATGCCAAAAGTACCAGCGATCTGCT
genomic: CTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttagtatta ... cttcttgcagTTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCT
EST: gi|33401638|gb|CF207265.1|CF207265
EST:     CTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAG                         TTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCT
genomic: CTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttagtatta ... cttcttgcagTTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCT
EST: gi|110361466|gb|EC924940.1|EC924940
EST:     CTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAG                         TTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCT
genomic: CTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttagtatta ... cttcttgcagTTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCT
EST: gi|110413975|gb|EC979795.1|EC979795
EST:     CTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAG                         TTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCT
genomic: CTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttagtatta ... cttcttgcagTTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCT