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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTACAGGAAAAGGGAATTCATATATGGGATGGCAATGCATCCAGGGACTACCTTGATAGgcaagtggttgtctatccatatctactttgctaaactggtgtgtttcgtgcaattcttactgatatattcaatattctctatttcag

Basic information

species Vitis vinifera
transcript Vv03s0038g04500.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G04480.1 (Glycine max), 5'ss of exon 6
GTCCTACAGGAAAAGGGAATTCATATATGGGATGGCAATGCATCCAGGGACTACCTTGATAGgcaag--tggttgtctatccatatctactttgctaaactggtgtgtttcgtgcaattcttactgatatattcaatattctctatttcag
|  || |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||  |     ||||   || | |   |||||||  |  | | ||   |||| || |||     |  | | || || | ||      
GCGCTGCAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGGGAgtaccttgataggcaagcataaccatctactaatttttgaattgctaattttttcttttctatgcagttattaaccggagttgctat-ttatatacag---

upper sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 5
GTCCTACAGGAAAAGGGAATTCATATATGGGATGGCAATGCATCCAGGGACTACCTTGATAGgcaag--tggttgtctatccatatctact--ttgctaaactggtgtgtttcgtgcaattcttactgatatattcaatattctctatttcag
|| || |||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||  ||    ||||   || | || |  |||| ||  |  | | ||   |||| || |||    |  ||| | |||| | |||  |||
GTGCTGCAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGAGAgtaccttgataggcaagcatgaccatctactaatttgtattaattgcaaattttttcttttctatgcagttattaac--tggatttagtatt-tatata-cag

upper sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 6
GTCCTACAGGAAAAGGGAATTCATATATGGGATGGCAATGCATCCAGGGACTACCTTGATAGgcaag--tggttgtctatccatatctactttgctaaactggtgtgtttc-----gtgcaattcttactgatatattcaatattctctatttcag
|| ||||||||||| || |||||||| |||||||||||||||||||| || ||||||||| ||||||  ||  | | |||    |  |  |  |   || | ||   |||       |       ||  | ||    |  | ||| | |||| |||
GTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGgcaagcatgactatatatttcaactttttaagtacaatttgtacatttttctttatattgcagtttgtaattggctttacattttttattgcag

upper sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G01240.1 (Glycine max), 5'ss of exon 6
GTCCTACAGGAAAAGGGAAT---TCATATATGGGATGGCAATGCATC-----CAGGGACTACCTTGATAGgcaagtggttgtctatccatatctactttgctaaactggtgtgtttcgtgcaattcttactgata-tattcaatattctc---tatttcag------------------------------------------
||| || |   |||||| ||     | |  |   || ||| |   ||     || |   |   ||  |   ||  |        |||  |  ||  | || || | |    | ||   || | ||| | |||| |  |    |||||  |   |  | |||                                          
GTCTTAGAAATAAAGGGTATGGACTAAACTTTCAATCGCAGTATTTCACTTGCATGAGGTGTTTTATTTTTCAGTTATCAAGGAATCTTTTACTGTTATGgtagattt---tattatatgaacttcattctgaaaacaaggtatattgacaggtgctacaggaaaaaggcattcatatttgggatggcaatgcatccagagaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110361466|gb|EC924940.1|EC924940
EST:     AAGGGAATTCATATATGGGATGGCAATGCATCCAGGGACTACCTTGATAG                         TATTGGCTTGGCAGACAGGGAAGAGGGTGACTTGGGACCCATATATGGGTT
genomic: AAGGGAATTCATATATGGGATGGCAATGCATCCAGGGACTACCTTGATAGgcaagtggtt ... tctatttcagTATTGGCTTGGCAGACAGGGAAGAGGGTGACTTGGGACCCATATATGGGTT
EST: gi|110413975|gb|EC979795.1|EC979795
EST:     AAGGGAATTCATATATGGGATGGCAATGCATCCAGGGACTACCTTGATAG                         TATTGGCTTGGCAGACAGGGAAGAGGGTGACTTGGGACCCATATATGGGTT
genomic: AAGGGAATTCATATATGGGATGGCAATGCATCCAGGGACTACCTTGATAGgcaagtggtt ... tctatttcagTATTGGCTTGGCAGACAGGGAAGAGGGTGACTTGGGACCCATATATGGGTT