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GAAAATAGAGATGAAAATGGCGGTATAGAGCTCCAATCCATTAAAGGAAACATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAGgcaagtacatgtctgcttatatctcctataaatttcacatcctaatatagataaagtcacacatcatgtgcttaagcgcggcttgtcccatggcatgcat...
species | Vitis vinifera |
transcript | Vv03s0038g04500.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAG GCACGGCTAATGGAAGTTAATGTTGATAGTTATATACAAATAAAAAACTCCEST: gi|352776732|gb|FQ472619.1|FQ472619
genomic: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAGgcaagtacat ... gatgttgcagGCACGGCTAATGGAAGTTAATGTTGATAGTTATATACAAATAAAAAATTCC
EST: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAG GCACGGCTAATGGAAGTTAATGTTGATAGTTATATACAAATAAAAAATTCCEST: gi|33401638|gb|CF207265.1|CF207265
genomic: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAGgcaagtacat ... gatgttgcagGCACGGCTAATGGAAGTTAATGTTGATAGTTATATACAAATAAAAAATTCC
EST: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAG GCACGGCTACTGGAAGTTAATGTTGATAGTTATATACAAATAAAAAACTCCEST: gi|45770374|gb|CN006226.1|CN006226
genomic: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAGgcaagtacat ... gatgttgcagGCACGGCTAATGGAAGTTAATGTTGATAGTTATATACAAATAAAAAATTCC
EST: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAG GCACGGCTAATGGAAGTTAATGTTGATAGTTATATACAAATAAAAAACTCCEST: gi|110361466|gb|EC924940.1|EC924940
genomic: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAGgcaagtacat ... gatgttgcagGCACGGCTAATGGAAGTTAATGTTGATAGTTATATACAAATAAAAAATTCC
EST: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAG GCACGGCTAATGGAAGTTAATGTTGATAGTTATATACAAATAAAAAACTCCEST: gi|110381698|gb|EC935151.1|EC935151
genomic: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAGgcaagtacat ... gatgttgcagGCACGGCTAATGGAAGTTAATGTTGATAGTTATATACAAATAAAAAATTCC
EST: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAG GCACGGCTAATGGAAGTTAATGTTGATAGTTATATACAAATAAAAAACTCCEST: gi|33407075|gb|CF212702.1|CF212702
genomic: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAGgcaagtacat ... gatgttgcagGCACGGCTAATGGAAGTTAATGTTGATAGTTATATACAAATAAAAAATTCC
EST: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAG GCACGGCTAATGGAAGTTAATGTTGATAGTTATATACAAATAAAAAACTCC
genomic: CATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAGgcaagtacat ... gatgttgcagGCACGGCTAATGGAAGTTAATGTTGATAGTTATATACAAATAAAAAATTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAATAGAGATGAAAATGGCGGTATAGAGCTCCAATCCATTAAAGGAAACATGGAGACTCTTCCTCCCCTTTCAGGCAATATATGCTTGTAGTTTTGAGgcaagtacatgtctgcttatatctcctataaatttcacatcctaatatagataaagtcacacatcatgtgcttaagcgcggcttgtcccatggcatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaag