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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgctaatttcagataattgagagagttggtcatgttcctcttctgaatgtatgtttccattatatggttttatattcaactattgaccagtgtagtaatcaatttttattcacagATGCGGTTTAATCTACGAAAAACTTTTCCGCTTCTTACAACTAAG

Basic information

species Vitis vinifera
transcript Vv03s0038g04500.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110413975|gb|EC979795.1|EC979795
EST:     CAAAGTTTGGTTGCCAG                         ATGCGGTTTAATCTACGAAAAACTTTTCCGCTTCTTACAACTAAG
genomic: CAAAGTTTGGTTGCCAGgtactgctaa ... ttattcacagATGCGGTTTAATCTACGAAAAACTTTTCCGCTTCTTACAACTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatggttttatattcaactattgaccagtgtagtaatcaatttttattcacagATGCGGTTTAATCTACGAAAAACTTTTCCGCTTCTTACAACTAAG
                    tattgac  putative branch site (score: 2)
 tttttattc  putative PPT
 tagtaatcaattttta  TA-rich tract