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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAGGCAGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAGgtcacttacccttctttttcttcagttttttggcatatctttcattgattttctgctaatattggtatgcattttcag

Basic information

species Vitis vinifera
transcript Vv01s0146g00420.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110399724|gb|EC966246.1|EC966246
EST:     GCAGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: GCAGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110400784|gb|EC967362.1|EC967362
EST:     GCAGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: GCAGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110398928|gb|EC965409.1|EC965409
EST:     ATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: ATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110364707|gb|EC928157.1|EC928157
EST:     CAGAAGATGAGTTACCAGCATATTCATCCCTCTCCTCTAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: CAGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110400176|gb|EC966724.1|EC966724
EST:     CATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: CATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110396702|gb|EC962396.1|EC962396
EST:     ATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: ATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110394967|gb|EC960419.1|EC960419
EST:     AGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: AGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110396575|gb|EC962266.1|EC962266
EST:     GATGAGTTACCAGCATATTCATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: GATGAGTTACCAGCATATTCATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110398892|gb|EC965371.1|EC965371
EST:     GCATATTCATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: GCATATTCATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110401891|gb|EC968516.1|EC968516
EST:     GATGAGTTACCAGCATATTCATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: GATGAGTTACCAGCATATTCATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110402604|gb|EC960546.1|EC960546
EST:     GGCCAGGCAGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: GGCCAGGCAGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110400272|gb|EC966827.1|EC966827
EST:     AGCATATTCATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: AGCATATTCATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|352785685|gb|FQ475688.1|FQ475688
EST:     GGCCAGACAGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: GGCCAGGCAGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110402498|gb|EC960273.1|EC960273
EST:     CATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: CATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110399908|gb|EC966439.1|EC966439
EST:     CAGCATATTCATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: CAGCATATTCATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110397216|gb|EC962944.1|EC962944
EST:     GATGAGTTACCAGCATATTCATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: GATGAGTTACCAGCATATTCATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
EST: gi|110398277|gb|EC964522.1|EC964522
EST:     AGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAG                         GGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG
genomic: AGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAGgtcacttacc ... gcattttcagGGTTTGGAGGACCTTTTCCATCAGCAGTGCCACCACCGGGGTTTCCTTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCAGGCAGAAGATGAGTTACCAGCATATTCATCATTCTCCTCAAGgtcacttacccttctttttcttcagttttttggcatatctttcattgattttctgctaatattggtatgcattttcag

- - - - - AAGATG
- - - - - - - - - - - - - - - - - - - CTCCTC