1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctcttcctactagtgcaaagcattgagcttgtgtttgttttatgtgcgtaataacccattgatttgtttactgactatttggatactctttctgtctagGGTATAATGATAATATGCCCACCAGATACCCAATACAGTCGCAGAACGTAAATCTCAATGCTCCTATGCAGTTTGATGGCACCTCATTCCCTCTCCAGAA
species | Vitis vinifera |
transcript | Vv00s0181g00220.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCAGTTCCACCACAGCAGCCTTCTGTGGGTCCAAGCATAACGGTTGGAG GGTATAATGATAATATGCCCACCAGATACCCAATACAGTCGCAGAACGTAA
genomic: TTCAGTTCCACCACAGCAGCCTTCTGTGGGTCCAAGCATAACGGTTGGAGgtatgtggtt ... ttctgtctagGGTATAATGATAATATGCCCACCAGATACCCAATACAGTCGCAGAACGTAA
tgcgtaataacccattgatttgtttactgactatttggatactctttctgtctagGGTATAATGATAATATGCCCACCAGATACCCAATACAGTCGCAGAACGTAAATCTCAATGCTCCTATGCAGTTTGATGGCACCTCATTCCCTCTCCAGAA
tactgac putative branch site (score: 1)
tactctttctgtct putative PPT
atttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctcttcctactagtgcaaagcattgagcttgtgtttgttttatgtgcgtaataacccattgatttgtttactgactatttggatactctttctgtctagGGTATAATGATAATATGCCCACCAGATACCCAATACAGTCGCAGAACGTAAATCTCAATGCTCCTATGCAGTTTGATGGCACCTCATTCCCTCTCCAGAA
-ctcttcc
- - - - - - - - caaagca
- - - - - - - - - - - - - -gcttgtg
- - - - - - - - - - - - - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - taaccca