Sequence
atgc intronic sequence ATGC exonic sequenceTTCAGGCTAGGGCTGAAGGTTGCCTCAGGCTATTGTGAGGGCATGCGTATTCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACAGAGGGGAATgtgagttgatgttcagtgtcaaattattatttacttctttttatatatgcataaatgtgtgtatctgttgggatgatggtggtgaatctgaaagatcatttttttcccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g35470.3 (Oryza sativa), 5'ss of exon 5
TTCAGGCTAGGGCTGAAGGTTGCCTCAGGCTATTGTGAGGGCATGCGTATTCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACAGAGGGGAATgtgagttgatgttcagtgtcaaattattattt-acttctttttatatatg-cataaatgtgtgtatctgttggg-atgatggtggtgaatctgaaagatcatttttttcccag
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TTCAGGCTTGGGCTGAGGGTTGCCCCAGGGTCTTTTGAAGGTATTCGTGTTAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtt----tgcaatg---agttattgttttactcatactgctagatgatttgaatgt---tactcgttaaccatatttctattgtatcttgcag----------------
upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G451882_T01 (Zea mays), 5'ss of exon 5
TTCAGGCTAGGGCTGAAGGTTGCCTCAGGCTATTGTGAGGGCATGCGTATTCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACAGAGGGGAATgtgagtt---gatgttcagtgtcaaattattatttacttctttttatatatgcataaatgtgtgtatctgttgggatgatggtggtgaatctgaaagatcatttttttcccag
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TTCAGGCTTGGCTTGAAGCTTGCCTCAGGATTTTGTGAGGGTGTTCGCATTCGTGAAGCAAAAACGGAAGCCTTCATGGTTAAGGACCATAGAGGAGAATgtaagtcccaaaaaattgtttttgtatttctattgacacatatctaaactattccagattcatttacctag------------------------------------------
upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G010471_T01 (Zea mays), 5'ss of exon 1
TTCAGGCTAGGGCTGAAGGTTGCCTCAGGCTATTGTGAGGGCATGCGTATTCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACAGAGGGGAATgtgagttgatgttcagtgtcaaattattatttacttctttttatatatgcataaatgtgtgtatctgttgggatgatggtggtgaatctgaaagatcatttttttcccag
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TTCAGACTTGGCTTGAAGATTGCCTCAGGATTTTGTGAGGGTGTTCGCATTCGTGAGGCAAAAACAGAAGCCTTTATGGTTAAGGACCATAGAGGAGAATgtaagtcccaaaaatgtatttgtgtgctgtattct-cacttgacatatatctaaac---tatttcaatttcatttatctag-----------------------------
upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G018837_T04 (Zea mays), 5'ss of exon 5
TTCAGGCTAGGGCTGAAGGTTGCCTCAGGCTATTGTGAGGGCATGCGTATTCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACAGAGGGGAATgtgagttgatgttcagtgtcaaattattatttacttctttttatatatgcataaatgtgtgtatctgttgggatgatggtggtgaatctgaaagatcatttttttcccag
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TTCAGACTTGGCTTGAAGATTGCCTCAGGATTTTGTGAGGGTGTTCGCATTCGTGAGGCAAAAACAGAAGCCTTTATGGTTAAGGACCATAGAGGAGAATgtaagtcccaaaaatgtatctgtgtactgtattcc-cacttgacatatatctaaac---tatttcaatttcatttatctag-----------------------------
upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AC202073.4_FGT001 (Zea mays), 5'ss of exon 4
TTCAGGCTAGGGCTGAAGGTTGCCTCAGGCTATTGTGAGGGCATGCGTATTCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACAGAGGGGAATgtgagttgatgttcagtgtcaaattattatttacttctttt-tatatatgcataaatgtgtgtatctgttgggatgatggtggtgaatctgaaagatcatttttttcccag
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TTTAGACTTGGGTTGAGAGTCTCGTCAGGGTTTTGTCAAGGAATTCGTGTTATGGAAGCAAAAACAGAGGCTTTTACTGTTAAAGATCACAGAGGCGAATgtatgtt--tatttagtgtgatgtcattgttaaataatctaacatataggctttaa-acatgaatacgttaac-taactcttttgtag-----------------------
upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G07330.2 (Glycine max), 5'ss of exon 5
TTCAGGCTAGGGCTGAAGGTTGCCTCAGGCTATTGTGAGGGCATGCGTATTCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACAGAGGGGAATgtgagttgatgttcagtgtcaaattattatttacttctttttatatatgcataaatgtgtgtatctgttgggatgatggtggtgaatctgaaagatcatttttttcccag
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TTCAGGATGGGGCTCAAAGTTTCCCCGGGTTGTTATGAGGGAATGCGTATTCGTGAAGCCAAAACAGAGGCCTTCACTGTTAAGGATCACCGTGGAGAATgtaagtacataaacttcattg--tttatgttctatccttcttctgtaatgatacttatacttgattgcag----------------------------------------
upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G06320.1 (Glycine max), 5'ss of exon 4
TTCAGGCTAGGGCTGAAGGTTGCCTCAGGCTATTGTGAGGGCATGCGTATTCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACAGAGGGGAATgtgagttgatgttcagtgtcaaattattatttacttctttttatatatgcataaatgtgtgtatctgttgggatgatggtggtgaatctgaaagatcatttttttcccag
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TTTAGATTGGGGCTGAAAGTTGCCTCAGGTTGTTGTGAGGAAATGCGTATCCGTGAAGCCAAATCAGAACCTTTCACAGTTAAGGATCATCGTGGAGAATgtaagttcat----aacttccttatatttgttatatctttctagagaattgttgtaatgaaacttcaattgaattatag-------------------------------
upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G30990.2 (Glycine max), 5'ss of exon 3
TTCAGGCTAGGGCTGAAGGTTGCCTCAGGCTATTGTGAGGGCATGCGTATTCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACAGAGGGGAATgtgagttgatgttcagtgtcaaattattatttacttctttttatatatgcataaatgtgtgtatctgttgggatgatggtggtgaatctgaaagatcatttttttcccag
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TTTAGATTGGGGCTGAAAGTTGCCTCAGGTTGTTGTGAGGAAATGCGTATCCGTGAAGCCAAATCAGAACCTTTCACAGTTAAGGATCATCGTGGAGAATgtaagttcat----aacttccttatatttgttatatctttctagagaattgttgtaatgaaacttcaattgaatcgtag-------------------------------
upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S34_132V6.1 (Physcomitrella patens), 5'ss of exon 4
TTCAGGCTAGGGCTGAAGGTTGCCTCAGGCTATTGTGAGGGCATGCGTATTCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACAGAGGGGAATgtgagttgatgttcagtgtc-aaattatt--attta-cttctttttatatatgcataaatgtgtgtatctgttgggatgatggtggtgaatctgaaagatcatttttttcccag
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TTTCGACTAGGCGTGAAAATCTCATCCACTTGTTCTGAGGGCGTTCGAATTCGAGAAGCTAAGACAGAGGCCTTCACTGTTAAGGATCATCGTGGTGAACgtaagatt-tccacatcgtctagattgtttggtgtatcttgtttctatttgtgattacgtcacagcatcatttcatatccccttccccagcgt-aacggtgg------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33402821|gb|CF208448.1|CF208448EST: TCGTGAAGC-AAAACAGATGCCTTCACTGTTAAGGATCAGATAGGGGAAT TATACAAGAAGCACTACCCTCCTGCATTGAATGATGAAGTTTGGCGATTGG
genomic: TCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACAGAGGGGAATgtgagttgat ... tttttcccagTATACAAGAAGCACTACCCTCCTGCATTGAATGATGAAGTTTGGCGATTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCAGGCTAGGGCTGAAGGTTGCCTCAGGCTATTGTGAGGGCATGCGTATTCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACAGAGGGGAATgtgagttgatgttcagtgtcaaattattatttacttctttttatatatgcataaatgtgtgtatctgttgggatgatggtggtgaatctgaaagatcatttttttcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG