Sequence
atgc intronic sequence ATGC exonic sequence...gtttgtaaagaaattactattttcttaaattgcaaaaaagaagaaaaaaagaatggaaaaaagaagcctaagcaaactgccaattgtttggttcttgcagGTCTTTGTGGATACCTTGGTGAAGAAGGCATATGACAATTGGATTAGTGTTGTAGAGTATGATGGCAAGTCTCTTTTAAACTTTAACCAAAGTAAGAGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G07330.2 (Glycine max), 3'ss of exon 7
gtttgtaaagaaattactattttcttaaattgcaaaaaagaagaaaaaaagaatggaa--aaaagaagcctaagcaaactgccaattgtttggttcttgcagGTCTTTGTGGATACCTTGGTGAAGAAGGCATATGACAATTGGATTAGTGTTGTAGAGTATGATGGCAAGTCTCTTTTAAACTTTAACCAAAGTAAGAGCT
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-tttgccagttttaaaatgttgctctggcataggatatccaccatatttttttttaaacttgtgtaaatttctgaaaaatgtgagtc-tctcattcttgtagGTTTATGTGGACACATTGGTGAAGAAGGCATATGAGAATTGGATGCATGTTATTGAGTATGATGGCGAGTCTCTGCTAAATTACAATCAGAATAAGACTT
upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G30990.2 (Glycine max), 3'ss of exon 5
gtttgtaaagaaattact--attttcttaaattgcaaaaaag-----aagaaaaaaagaatggaaaaaagaagcctaagcaaactgccaattgtttggttcttgcagGTCTTTGTGGATACCTTGGTGAAGAAGGCATATGACAATTGGATTAGTGTTGTAGAGTATGATGGCAAGTCTCTTTTAAACTTTAACCAAAGTAAGAGCT
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-----taaaagaataagtggagattacaaagatgttaaaagttcttcaaaactaaagggaaataaaagatgaattttctgaaaattccaacaattt--ctgttgtagGTTTATGTAGACACATTGGTGAAGAAGGCATATGATAATTGGATGCATGTTATTGAGTATGATGGGAAGTCTCTGATAAATGACAACGAGGATAAGGCTT
upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G06320.1 (Glycine max), 3'ss of exon 6
----gtttgtaaagaaattactattttcttaaattgcaaaaaagaagaaaaaaagaatggaaaaaagaagcctaagcaaactgccaattgtttggttcttgcagGTCTTTGTGGATACCTTGGTGAAGAAGGCATATGACAATTGGATTAGTGTTGTAGAGTATGATGGCAAGTCTCTTTTAAACTTTAACCAAAGTAAGAGCT
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aaaagaataagtggagattacaaagatgttaaaagttcttcaaaaccatagggggaa--aaaacgatgaattttctgaaattgccaacgattt--ctgttgtagGTTTATGTAGACACGTTGGTGAAGAAGGCATATGATAATTGGATGCATGTTATTGAGTATGATGGGAAGTCTCTGATAAATGACAACGAGGATAAGACTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33402821|gb|CF208448.1|CF208448EST: TAGCAGGTGGACAATATCACTCAGCTGATTCTCTTACTGACAATCAGAAG GTCTTTGTGGATACCTTGGTGAAGAAGGCATATGACAATTGGATTAGTGTT
genomic: TAGCAGGTGGACAATATCACTCAGCTGATTCTCTTACTGACAATCAGAAGgtaggtgatc ... gttcttgcagGTCTTTGTGGATACCTTGGTGAAGAAGGCATATGACAATTGGATTAGTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaagaatggaaaaaagaagcctaagcaaactgccaattgtttggttcttgcagGTCTTTGTGGATACCTTGGTGAAGAAGGCATATGACAATTGGATTAGTGTTGTAGAGTATGATGGCAAGTCTCTTTTAAACTTTAACCAAAGTAAGAGCT
ttcttgc CT-rich tract
aaaaaagaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtaaagaaattactattttcttaaattgcaaaaaagaagaaaaaaagaatggaaaaaagaagcctaagcaaactgccaattgtttggttcttgcagGTCTTTGTGGATACCTTGGTGAAGAAGGCATATGACAATTGGATTAGTGTTGTAGAGTATGATGGCAAGTCTCTTTTAAACTTTAACCAAAGTAAGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - aaagaaa
- - - - - - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -aatggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgccaa