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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGATGGGTCATTCCACAAGAGGTTGAATAAAGCTGGAATATTCACTGTTGAGGACTTCCTACGACTTGTAGTTAGAGATTCACAAAGATTACGGAATgtaagaatgtacattttgttgtcatttcagaatttgaatccgtctattgtaatttttatttatttgtctccaattgttgtag

Basic information

species Vitis vinifera
transcript Vv00s0181g00220.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G018837_T01 (Zea mays), 5'ss of exon 6
CAAAGATGGGTCATTCCACAAGAGGTTGAATAAAGCTGGAATATTCACTGTTGAGGACTTCCTACGACTTGTAGTTAGAGATTCACAAAGATTACGGAATgtaagaatgtacattt--tgttgtcatttca----gaatttgaatccgtctattgtaatttttatttatttgtctccaattgttgtag
 || |||||||||||||| |||||| |||| ||| |||||||||  || |||||||| |||||  | ||||| ||| | ||| |||| | |||||| | ||||||  |||   |    |||| | |  | |     | | |   | | | | || |  ||  |  ||||   |       |||  |||
GAAGGATGGGTCATTCCATAAGAGGCTGAACAAATCTGGAATATCTACAGTTGAGGATTTCCTTAGGCTTGTGGTTCGGGATCCACAGAAATTACGCAGTgtaagtttgtgtgtgcagtgttattaacttattcttactatactttcatgtgttttggttgctgattataaatgctattctgtgatag

upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G06320.1 (Glycine max), 5'ss of exon 5
CAAAGATGGGTCATTCCACAAGAGGTTGAATAAAGCTGGAATATTCACTGTTGAGGACTTCCTACGACTTGTAGTTAGAGATTCACAAAGATTACGGAATgtaagaatgtacattttgttgtcatttcagaatttga-----atccgtctattgt--aatttttatttatttgt-ctccaattgttgtag---------------------------------------------------------
 || ||||||||||| ||||| ||| | ||||||||||||||||  || ||||| |||||| || || |||| || |||||  | || ||||| |||||||||||||| || |||||  |  |||||  || ||| |     ||    | | |||  |||| || || ||||||  |  ||||| ||  |                                                         
TAAGGATGGGTCATTTCACAAAAGGCTAAATAAAGCTGGAATATATACGGTTGAAGACTTCTTAAGATTTGTGGTCAGAGACCCTCAGAGATTGCGGAATgtaagaatctagatttttgt-ccatttaggattttaatgtcaattgaccaaatgttcaattctttttgatttgtatttgaattgatgatgtaaaattattttatatgtcaaaggatttatttggttaactatacttccttattgtag

upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G30990.2 (Glycine max), 5'ss of exon 4
CAAAGATGGGTCATTCCACAAGAGGTTGAATAAAGCTGGAATATTCACTGTTGAGGACTTCCTACGACTTGTAGTTAGAGATTCACAAAGATTACGGAATgtaagaatgtacattttgttgtcatttcagaatttga-----atccgtctattgt--aatttttatttatttgt-ctccaattgttgtag--------------------------------
||| ||||||||||| ||||| ||| | ||||||||||||||||  |  ||||| |||||| || ||||||| || |||||  | || ||||| ||||||||||||||  | |||||  |  |||||  || ||| |     ||   |||| ||   ||||  | ||  |||||  |  ||| | ||                                   
CAAGGATGGGTCATTTCACAAAAGGCTAAATAAAGCTGGAATATATATGGTTGAAGACTTCTTAAGACTTGTGGTCAGAGACCCTCAGAGATTGCGGAATgtaagaatccagatttttgt-ccatttaggattttaatgtcaattgatctaatgctcaattccttttggtttgtatttgaatcgatgatatataattattttatggatacttcttattgtag

upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ34469 (Selaginella moellendorffii), 5'ss of exon 5
CAAAGATGGGTCATTCCACAAGAGGTTGAATAAAGCTGGAATATTCACTGTTGAGGACTTCCTACGACTTGTAGTTAGAGATTCACAAAGATTACGGAATgtaag-aatgtacattttgttgtcatttcagaatttgaatccgtctattgtaatttttatttatttgtctccaattgttgtag
 || || ||| |||||||||||||| | || ||||||||||||||  |||| |||||||| || || || || || |  ||  | || | | |||| || ||||| |||| |  ||   || |  ||||    | |   || |   || ||| ||  | |      |                
AAAGGACGGGGCATTCCACAAGAGGCTCAACAAAGCTGGAATATTTTCTGTGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACGAAACgtaagtaatgaaagttagttttttctttctctctctctgtcagctcat-gtagttggtctggcgcag----------------

upper sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ05811 (Selaginella moellendorffii), 5'ss of exon 5
CAAAGATGGGTCATTCCACAAGAGGTTGAATAAAGCTGGAATATTCACTGTTGAGGACTTCCTACGACTTGTAGTTAGAGATTCACAAAGATTACGGAATgtaagaatgtacattttgttgtcatttcagaatttgaatccgtctattgtaatttttatttatttgtctccaattgttgtag
 || || ||| |||||||||||||| | || ||||||||||||||  |||| |||||||| || || || || || |  ||  | || | | |||| || ||||| |  |   |||| || ||  |      |||   ||  | | ||  |  |  | |   || ||||      |      
AAAGGACGGGGCATTCCACAAGAGGCTCAACAAAGCTGGAATATTTTCTGTGGAGGACTTTCTGCGTCTGGTGGTGATGGACCCGCAGAAACTACGAAACgtaagta-atgagtttttttctctctc-----tttctctctctttctttcagctcatgta-gttggtctggcgcag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402821|gb|CF208448.1|CF208448
EST:     TTGAGGACTTCCTACGACTTGTAGTTAGAGATTCACAAAGATTACGGAAT                         ATTCTTGGAAGTGGCATGTCAAATAAGATGTGGGATGTTCTTGTGGAGCAT
genomic: TTGAGGACTTCCTACGACTTGTAGTTAGAGATTCACAAAGATTACGGAATgtaagaatgt ... attgttgtagATTCTTGGAAGTGGCATGTCAAATAAGATGTGGGATGTTCTTGTGGAGCAT