Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGAAGCAAAAGATTTGCTGGGAGATGAGTGGATTCAAATTCATCGCAGAATTGTCCAGCAACATGCGTCGGCATATCAGCGTACCTCTTGGGTGAAGgtctgtatcaatttataaaacatgctctataactccctaagcaagcaacatctacag

Basic information

species Selaginella moellendorffii
transcript EFJ38418
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ38418 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: AT5G52340.1 (Arabidopsis thaliana), 5'ss of exon 9
GTCAGAAGCAAAAGATTTGCTGGGAGATGAGTGGATTCAAATTCATCGCAGAATTGTCCAGCAACATGCGTCGGCATATCAGCGTACCTCTTGGGTGAAGgtctgt---atcaatttataaaacatgctctataactccctaagcaagcaacatcta--cag---------------
||||||||||||||||||  | || ||||| ||| ||||||| ||||| |||||||| || ||||||||       ||  || |    |||||||  ||||| |     |||  ||||      || || || || | | | |  | | |   |||    ||               
GTCAGAAGCAAAAGATTTATTAGGTGATGATTGGGTTCAAATACATCGAAGAATTGTACAACAACATGCAAATCAGTACAAGAGAGTTTCTTGGGCAAAGgtttactcaatcgtttta-ggtttatactttaaaaatgctttaaaatgtattttctgattagtcttttcttctgcag