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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGAGTTTCGGCGAGGCTGTGGCCAAAAGTAAGAGGTCCCCCGAAAAGCTTTTTGTTCTGCTTGACATGTATGAGGCAATGCGAGACCTTTTACCCGAGgtaacttgatctcatttttgcgtgcattgggatcagaactctacgttttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ38418
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ38418 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: Vv08s0007g02340.t01 (Vitis vinifera), 5'ss of exon 6
TGCGAGTTTCGGCGAGGCTGTGGCCAAAAGTAAGAGGTCCCCCGAAAAGCTTTTTGTTCTGCTTGACATGTATGAGGCAATGCGAGACCTTTTACCCGAGgta-acttgatctcattt-ttgcgtg--cattgggatcagaactctacgttttgcag-------------------------------------------
    ||||| || || ||| | |||||||| ||||||||||| |||||  | ||||||||  | ||||||||||||  ||||||||| ||     | ||||||   || || | | |  |||| |   || ||   |  | |  |||   |   |||                                           
CCTTAGTTTTGGAGATGCTATTGCCAAAAGCAAGAGGTCCCCTGAAAAATTATTTGTTCTCTTAGACATGTATGAGATAATGCGAGAACTGCATTCAGAGgtatgatttatataactagttgcataaacactgaattatggatactaaactagccagcagattggaagttgatattggttatgtgaagttttagtgagct