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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAAGCTGTGGAGAAGGATGCGACGAAGACACCAGTACAAGATGGCACAGTGCATCCTCTTACTAGCTATGTTATCAACTACGTGAAGTTCCTCTTTGAgtaagttcaagtattttcaatccttttttaatagtttggatggttcctag

Basic information

species Selaginella moellendorffii
transcript EFJ38418
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ38418 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GLYMA10G34000.1 (Glycine max), 5'ss of exon 7
TCGAAGCTGTGGAGAAGGATGCGACGAAGACACCAGTACAAGATGGCACAGTGCATCCTCTTACTAGCTATGTTATCAACTACGTGAAGTTCCTCTTTGAgtaagttcaagtatttt------caatccttttttaatagtt------tggatggttcctag--------------------------------------
  || || || ||||| ||||| ||||||||  |||||  |||||| || || |||||||| || |||||||| || ||||| ||||||||  | ||||||||||||||  ||| ||        ||||   |||  |||        |  ||  || ||||                                      
AAGAGGCAGTTGAGAAAGATGCTACGAAGACTGCAGTAACAGATGGAACTGTCCATCCTCTAACAAGCTATGTAATTAACTATGTGAAGTTTTTATTTGAgtaagttcagctatgttgtcatctgatcccaattttgtagccataccatcaattatttctagcattttttgctgtgttcactgatgacaaaaatgttagt

upper sequence: EFJ38418 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GLYMA20G33590.1 (Glycine max), 5'ss of exon 7
TCGAAGCTGTGGAGAAGGATGCGACGAAGACACCAGTACAAGATGGCACAGTGCATCCTCTTACTAGCTATGTTATCAACTACGTGAAGTTCCTCTTTGAgtaagttcaagtatttt------caatcc---ttttttaatagtttggatggttcctag-----------------------------------------
  || || || ||||| ||||| || |||||  |||||  |||||| || || |||||||| || |||||||| || ||||| ||||||||  | ||||||||||||||  ||| ||        ||||   |||| ||   |  |  ||  || ||||                                         
AAGAGGCAGTTGAGAAAGATGCTACAAAGACTGCAGTAACAGATGGAACTGTCCATCCTCTAACAAGCTATGTAATTAACTATGTGAAGTTTTTATTTGAgtaagttcagctatgttgtcatctgatcccaattttgtagccgcatcaattatttctagcattttttgctgtgttcactgatgacaaaaatgttagtcat