Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagccagttttaaaattgacaatagagtaagatatttccacagGTCAGAAGCAAAAGATTTGCTGGGAGATGAGTGGATTCAAATTCATCGCAGAATTGTCCAGCAACATGCGTCGGCATATCAGCGTACCTCTTGGGTGAAG

Basic information

species Selaginella moellendorffii
transcript EFJ38418
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ38418 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: AT5G52340.1 (Arabidopsis thaliana), 3'ss of exon 8
-------------------------------------gtaagcagccagttttaaaattgac-----aatagagtaagatatttccacagGTCAGAAGCAAAAGATTTGCTGGGAGATGAGTGGATTCAAATTCATCGCAGAATTGTCCAGCAACATGCGTCGGCATATCAGCGTACCTCTTGGGTGAAG
                                       || |||  |    ||||  | |        |||||| | || ||| |||||||||||||||||||||||  | || ||||| ||| ||||||| ||||| |||||||| || ||||||||       ||  || |    |||||||  |||
gtttggttctgtttcttcggctccatctttcttaaacagaaccagaaaagcctaaacataatcctgagttagagttacat-ttttcacagGTCAGAAGCAAAAGATTTATTAGGTGATGATTGGGTTCAAATACATCGAAGAATTGTACAACAACATGCAAATCAGTACAAGAGAGTTTCTTGGGCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagcagccagttttaaaattgacaatagagtaagatatttccacagGTCAGAAGCAAAAGATTTGCTGGGAGATGAGTGGATTCAAATTCATCGCAGAATTGTCCAGCAACATGCGTCGGCATATCAGCGTACCTCTTGGGTGAAG
                         aattgac  putative branch site (score: 3)
                                            tatttcc  putative PPT
                   ttttaaaattgacaat  TA-rich tract