1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacgtgctttcttcaaaatctagttgattatatattgtggcttttctgcagATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTCTTTTCTCAG
species | Selaginella moellendorffii |
transcript | EFJ23704 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGA ATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTCEST: gi|169070863|gb|FE480140.1|FE480140
genomic: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGAgtacgtgctt ... ttttctgcagATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTC
EST: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGA ATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGGTGATCATTCEST: gi|169098721|gb|FE497269.1|FE497269
genomic: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGAgtacgtgctt ... ttttctgcagATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTC
EST: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGA ATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTCEST: gi|169026515|gb|FE434789.1|FE434789
genomic: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGAgtacgtgctt ... ttttctgcagATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTC
EST: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGA ATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTCEST: gi|169101920|gb|FE507756.1|FE507756
genomic: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGAgtacgtgctt ... ttttctgcagATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTC
EST: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGA ATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCEST: gi|169080648|gb|FE487169.1|FE487169
genomic: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGAgtacgtgctt ... ttttctgcagATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTC
EST: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGA ATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTCEST: gi|169037413|gb|FE445504.1|FE445504
genomic: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGAgtacgtgctt ... ttttctgcagATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTC
EST: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGA ATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTCEST: gi|169075057|gb|FE481443.1|FE481443
genomic: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGAgtacgtgctt ... ttttctgcagATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTC
EST: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGA ATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTC
genomic: CTGCAATTATTTTGCTTGGTCTCGGCTTTTATGAGTATGGCTTTCCAGGAgtacgtgctt ... ttttctgcagATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTC
gtacgtgctttcttcaaaatctagttgattatatattgtggcttttctgcagATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTCTTTTCTCAG
agttgat putative branch site (score: 23)
cttttctgc putative PPT
aaaatctagttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgctttcttcaaaatctagttgattatatattgtggcttttctgcagATAGCCAAGTGTGTAGAAATCGGACTGCCAGCGTTGATCATTCTTCTCCTCTTTTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC