1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagcacgcttgcaaagtcgtatctggatgctcacattctccacctgcagGTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTATCTACTGTGTGACGTTTGCGGTCTTAG
species | Selaginella moellendorffii |
transcript | EFJ23704 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAG GTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTAEST: gi|169070862|gb|FE480139.1|FE480139
genomic: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAGgtaagcacgc ... ccacctgcagGTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTA
EST: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAG GTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTAEST: gi|169098720|gb|FE497268.1|FE497268
genomic: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAGgtaagcacgc ... ccacctgcagGTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTA
EST: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAG GTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTAEST: gi|169087036|gb|FE496181.1|FE496181
genomic: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAGgtaagcacgc ... ccacctgcagGTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTA
EST: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAG GTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTAEST: gi|169023834|gb|FE433499.1|FE433499
genomic: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAGgtaagcacgc ... ccacctgcagGTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTA
EST: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAG GTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTAEST: gi|169101919|gb|FE507755.1|FE507755
genomic: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAGgtaagcacgc ... ccacctgcagGTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTA
EST: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAG GTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTAEST: gi|169075056|gb|FE481442.1|FE481442
genomic: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAGgtaagcacgc ... ccacctgcagGTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTA
EST: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAG GTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTAEST: gi|169093767|gb|FE494709.1|FE494709
genomic: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAGgtaagcacgc ... ccacctgcagGTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTA
EST: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAG GTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTAEST: gi|169106778|gb|FE505437.1|FE505437
genomic: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAGgtaagcacgc ... ccacctgcagGTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTA
EST: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAG GTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTA
genomic: TCGCACGGTGCAAATCGCGGCGATTTTTATGCTGGTCTTTTCGATCTTAGgtaagcacgc ... ccacctgcagGTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTA
gtaagcacgcttgcaaagtcgtatctggatgctcacattctccacctgcagGTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTATCTACTGTGTGACGTTTGCGGTCTTAG
tgctcac putative branch site (score: 35)
ttctccacct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacgcttgcaaagtcgtatctggatgctcacattctccacctgcagGTAAATTTGGGGCAGTGATAGCTTCCATACCACAATCGATTGTCGCTGCTATCTACTGTGTGACGTTTGCGGTCTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT