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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCGGCTTCGCCCTGTTCATGGGATTCTCCGTCCCACAGTACTTCTACGAGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGGgtaatttttcttgtcactgttttaactcgtctaaaacgtttgtttcgcgcttggacag

Basic information

species Selaginella moellendorffii
transcript EFJ23704
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169026049|gb|FE432932.1|FE432932
EST:     AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGG                         TTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
genomic: AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGGgtaatttttc ... gcttggacagTTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
EST: gi|169070862|gb|FE480139.1|FE480139
EST:     AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGG                         TTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
genomic: AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGGgtaatttttc ... gcttggacagTTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
EST: gi|169098720|gb|FE497268.1|FE497268
EST:     AGTTCAGATCGACCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGG                         TTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
genomic: AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGGgtaatttttc ... gcttggacagTTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
EST: gi|169087036|gb|FE496181.1|FE496181
EST:     AGTTCAGATCGACCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGG                         TTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
genomic: AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGGgtaatttttc ... gcttggacagTTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
EST: gi|169023834|gb|FE433499.1|FE433499
EST:     AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGG                         TTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
genomic: AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGGgtaatttttc ... gcttggacagTTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
EST: gi|169096176|gb|FE500336.1|FE500336
EST:     AGTTCAGATCGACCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGG                         TTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
genomic: AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGGgtaatttttc ... gcttggacagTTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
EST: gi|169101919|gb|FE507755.1|FE507755
EST:     AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGG                         TTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
genomic: AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGGgtaatttttc ... gcttggacagTTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
EST: gi|169075056|gb|FE481442.1|FE481442
EST:     AGTTCAGATCGACCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGG                         TTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
genomic: AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGGgtaatttttc ... gcttggacagTTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
EST: gi|169093767|gb|FE494709.1|FE494709
EST:     AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGG                         TTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
genomic: AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGGgtaatttttc ... gcttggacagTTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
EST: gi|169106778|gb|FE505437.1|FE505437
EST:     AGTTCAGATCGACCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGG                         TTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT
genomic: AGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGGgtaatttttc ... gcttggacagTTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 45

CCTCGGCTTCGCCCTGTTCATGGGATTCTCCGTCCCACAGTACTTCTACGAGTTCAGATCGGCCAGCAACCATGGCCCAGTTAACACAAATGCGGAATGGgtaatttttc ... gcttggacagTTTAACGACATACTCAACACCTTATTTTCTTCAAACGTTCTGGTGGGATTTGTGCTGGCTGTGCTCCTGGACAGCACCTTGAAAGCGCATAAGAAGGATC




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