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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTTGCCCGTCGTTGTAGGTGGTTCCTTTGCGTATATTATTCCCATAACATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGATgtaagtggaagaaaatgtgccctcggattcgttgattctgaagggttgttctttccag

Basic information

species Selaginella moellendorffii
transcript EFJ23704
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169093768|gb|FE494710.1|FE494710
EST:     CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGAT                         AGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
genomic: CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGATgtaagtggaa ... ttctttccagAGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
EST: gi|169023835|gb|FE433500.1|FE433500
EST:     CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGAT                         AGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
genomic: CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGATgtaagtggaa ... ttctttccagAGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
EST: gi|169070863|gb|FE480140.1|FE480140
EST:     CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGAT                         AGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
genomic: CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGATgtaagtggaa ... ttctttccagAGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
EST: gi|169098721|gb|FE497269.1|FE497269
EST:     CATCGATTACCAACTCGCCAAGGCTACGATCCATATACTACGATCACGAT                         AGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
genomic: CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGATgtaagtggaa ... ttctttccagAGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
EST: gi|169026515|gb|FE434789.1|FE434789
EST:     CATCGATTACCAACTCGCCAAGGCTACGATCCATATACTACGATCACGAT                         AGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
genomic: CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGATgtaagtggaa ... ttctttccagAGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
EST: gi|169101920|gb|FE507756.1|FE507756
EST:     CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGAT                         AGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
genomic: CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGATgtaagtggaa ... ttctttccagAGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
EST: gi|169080648|gb|FE487169.1|FE487169
EST:     CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGAT                         AGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
genomic: CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGATgtaagtggaa ... ttctttccagAGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
EST: gi|169026076|gb|FE432933.1|FE432933
EST:     CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGAT                         AGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
genomic: CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGATgtaagtggaa ... ttctttccagAGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
EST: gi|169106779|gb|FE505438.1|FE505438
EST:     CATCGATTACCAACTCGCCAAGGCTACGATCCATATACTACGATCACGAT                         AGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
genomic: CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGATgtaagtggaa ... ttctttccagAGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
EST: gi|169037413|gb|FE445504.1|FE445504
EST:     CATCGATTACCAACTCGCCAAGGCTACGATCCATATACTACGATCACGAT                         AGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
genomic: CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGATgtaagtggaa ... ttctttccagAGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
EST: gi|169075057|gb|FE481443.1|FE481443
EST:     CATCGATTACCAACTCGCCAAGGCTACGATCCATATACTACGATCACGAT                         AGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT
genomic: CATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGATgtaagtggaa ... ttctttccagAGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 31 (downstream exon)
Score: 10

AAGGTTGCCCGTCGTTGTAGGTGGTTCCTTTGCGTATATTATTCCCATAACATCGATTACCAACTCGCCAAGGCTACGATCGATATACTACGATCACGATgtaagtggaa ... ttctttccagAGATTTGTTCACACGATCAGGGCAGTTCAGGGTGCAGTCATTCTTTCCTCTATCTTACAGATAATTTTAGGATTTAGTGGTCTATGGGGGATCATGTTGA




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