1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagcgaaattctttctatccaatcgaggattccagagagaactttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGCAAGCGTCTCTACGTGACAAACTCGCTGTTCAGCTCCTGGGACAATCAGT
species | Selaginella moellendorffii |
transcript | EFJ11187 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAGATGCTGCAGCTCAGCCTCGACGGCEST: gi|169024425|gb|FE434363.1|FE434363
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAGATGCTGCAGCTCAGCCTCGACGGCEST: gi|169070383|gb|FE479348.1|FE479348
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAGATGCTGCAGCTCAGCCTCGACGGCEST: gi|169111354|gb|FE510903.1|FE510903
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAGATGCTGCAGCTCAGCCTCGACGGCEST: gi|169057337|gb|FE466798.1|FE466798
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAGATGCTGCAGCTCAGCCTCGACGGCEST: gi|169103452|gb|FE507572.1|FE507572
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGCEST: gi|169064647|gb|FE471378.1|FE471378
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAGATGCTGCAGCTCAGCCTCGACGGCEST: gi|169024411|gb|FE434362.1|FE434362
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAGATGCTGCAGCTCAGCCTCGACGGCEST: gi|169099416|gb|FE501006.1|FE501006
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAGATGCTGCAGCTCAGCCTCGACGGCEST: gi|169024773|gb|FE433307.1|FE433307
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGCEST: gi|169064646|gb|FE471377.1|FE471377
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAGATGCTGCAGCTCAGCCTCGACGGCEST: gi|169048832|gb|FE455299.1|FE455299
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAGATGCTGCAGCTCAGCCTCGACGGCEST: gi|169038579|gb|FE446904.1|FE446904
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAGATGCTGCAGCTCAGCCTCGACGGCEST: gi|169069403|gb|FE479486.1|FE479486
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGCEST: gi|169059196|gb|FE467198.1|FE467198
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTGAGAGGAGGCCCCCAGATGCTGCAGCTCAGCCTCGACGGCEST: gi|169038580|gb|FE446905.1|FE446905
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGC
EST: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAG GGGAAGAAACTG
genomic: TCGAGAGCTCTACCGGAGAAGACTGGCAATCCAGCGTTCCTCCAGTCCAGgtaagcgaaa ... ttgtttccagGGGAAGAAACTG
gtaagcgaaattctttctatccaatcgaggattccagagagaactttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGCAAGCGTCTCTACGTGACAAACTCGCTGTTCAGCTCCTGGGACAATCAGT
ctttgtttcc CT-rich tract
aaattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgaaattctttctatccaatcgaggattccagagagaactttgtttccagGGGAAGAAACTGAGAGGAGGCCCCCAAATGCTGCAGCTCAGCCTCGACGGCAAGCGTCTCTACGTGACAAACTCGCTGTTCAGCTCCTGGGACAATCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC