1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGTCGATGACGAGCTCCACCACTCTGGATGGAATTCTTGCAGCTCCTGCCATGGAGAGAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGTgtgagtatatcacagctactaagatttgttcgtgagagctaagttctttggtctttcag
species | Selaginella moellendorffii |
transcript | EFJ11187 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATGGAGAGAAGGATGCTGAGCGTCGCTACCTTGTTCTTCCATCGTTAGT TTCTTCTCGAATTTACATTGTGGACACTCTGAAAGATCCGAAAGCTCCAGTEST: gi|169035104|gb|FE444900.1|FE444900
genomic: CATGGAGAGAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGTgtgagtatat ... ggtctttcagTTCTTCTCGAATTTACATTGTGGACACTCTCAAAGATCCGAAAGCTCCAGT
EST: CATGGAGAGAAGGATGCTGAGCGTCGCTACCTTGTTCTTCCATCGTTAGT TTCTTCTCGAATTTACATTGTGGACACTCTGAAAGATCCGAAAGCTCCAGTEST: gi|169059197|gb|FE467199.1|FE467199
genomic: CATGGAGAGAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGTgtgagtatat ... ggtctttcagTTCTTCTCGAATTTACATTGTGGACACTCTCAAAGATCCGAAAGCTCCAGT
EST: CATGGAGAGAAGGATGCTGAGCGTCGCTACCTTGTTCTTCCATCGTTAGT TTCTTCTCGAATTTACATTGTGGACACTCTGAAAGATCCGAAAGCTCCAGTEST: gi|169070384|gb|FE479349.1|FE479349
genomic: CATGGAGAGAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGTgtgagtatat ... ggtctttcagTTCTTCTCGAATTTACATTGTGGACACTCTCAAAGATCCGAAAGCTCCAGT
EST: CATGGAGAGAAGGATGCTGAGCGTCGCTACCTTGTTCTTCCATCGTTAGT TTCTTCTCGAATTTACATTGTGGACACTCTGAAAGATCCGAAAGCTCCAGTEST: gi|169103453|gb|FE507573.1|FE507573
genomic: CATGGAGAGAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGTgtgagtatat ... ggtctttcagTTCTTCTCGAATTTACATTGTGGACACTCTCAAAGATCCGAAAGCTCCAGT
EST: CATGGAGAGAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGT TTCTTCTCGAATTTACATTGTGGACACTCTCAAAGATCCGAAAGCTCCAGTEST: gi|169099417|gb|FE501007.1|FE501007
genomic: CATGGAGAGAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGTgtgagtatat ... ggtctttcagTTCTTCTCGAATTTACATTGTGGACACTCTCAAAGATCCGAAAGCTCCAGT
EST: CATGGAGAGAAGGATGCTGAGCGTCGCTACCTTGTTCTTCCATCGTTAGT TTCTTCTCGAATTTACATTGTGGACACTCTGAAAGATCCGAAAGCTCCAGTEST: gi|169057338|gb|FE466799.1|FE466799
genomic: CATGGAGAGAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGTgtgagtatat ... ggtctttcagTTCTTCTCGAATTTACATTGTGGACACTCTCAAAGATCCGAAAGCTCCAGT
EST: CATGGAGAGAAGGATGCTGAGCGTCGCTACCTTGTTCTTCCATCGTTAGT TTCTTCTCGAATTTACATTGTGGACACTCTGAAAGATCCGAAAGCTCCAGTEST: gi|169026696|gb|FE433982.1|FE433982
genomic: CATGGAGAGAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGTgtgagtatat ... ggtctttcagTTCTTCTCGAATTTACATTGTGGACACTCTCAAAGATCCGAAAGCTCCAGT
EST: CATGGAGAGAAGGATGCTGAGCGTCGCTACCTTGTTCTTCCATCGTTAGT TTCTTCTCGAATTTACATTGTGGACACTCTGAAAGATCCGAAAGCTCCAGTEST: gi|169069404|gb|FE479487.1|FE479487
genomic: CATGGAGAGAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGTgtgagtatat ... ggtctttcagTTCTTCTCGAATTTACATTGTGGACACTCTCAAAGATCCGAAAGCTCCAGT
EST: CATGGAGAGAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGT TTCTTCTCGAATTTACATTGTGGACACTCTCAAAGATCCGAAAGCTCCAGTEST: gi|169024774|gb|FE433308.1|FE433308
genomic: CATGGAGAGAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGTgtgagtatat ... ggtctttcagTTCTTCTCGAATTTACATTGTGGACACTCTCAAAGATCCGAAAGCTCCAGT
EST: GAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGT TTCTTCTCGAATTTACATTGTGGACACTCTCAAAGATCCGAAAGCTCCAGT
genomic: GAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGTgtgagtatat ... ggtctttcagTTCTTCTCGAATTTACATTGTGGACACTCTCAAAGATCCGAAAGCTCCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTCGATGACGAGCTCCACCACTCTGGATGGAATTCTTGCAGCTCCTGCCATGGAGAGAAGGATGCTGAGCGTCGGTACCTTGTTCTTCCATCGCTAGTgtgagtatatcacagctactaagatttgttcgtgagagctaagttctttggtctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG