1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagcggtttttttctttttttctcttttttcctggagttttgttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCTCTGAGCAGTACTTTGGTCCGGTTCTTCAAGAAAGATGATAGCACTTGGG
species | Selaginella moellendorffii |
transcript | EFJ11187 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAG ATTCGGTTTTTACACAATCCAGAAAAGGATACTGGCTAEST: gi|169035104|gb|FE444900.1|FE444900
genomic: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAGgtagcggttt ... gttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTA
EST: CTTTGAAGCANACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAG ATTCGGTTTTTACACAATCCEST: gi|169035103|gb|FE444899.1|FE444899
genomic: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAGgtagcggttt ... gttggtgtagATTCGATTTTTACACAATCC
EST: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAG ATTCGGTTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCTEST: gi|169059197|gb|FE467199.1|FE467199
genomic: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAGgtagcggttt ... gttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCT
EST: CTTTGAAGCANACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAG ATTCGGTTTTTACACAATCCAGEST: gi|169024425|gb|FE434363.1|FE434363
genomic: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAGgtagcggttt ... gttggtgtagATTCGATTTTTACACAATCCAG
EST: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAG ATTCGGTTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCTEST: gi|169111354|gb|FE510903.1|FE510903
genomic: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAGgtagcggttt ... gttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCT
EST: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAG ATTCGGTTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCTEST: gi|169103452|gb|FE507572.1|FE507572
genomic: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAGgtagcggttt ... gttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCT
EST: CGATCTCGGTGACACTGGATTGATCCCACTTGAG ATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCTEST: gi|169064647|gb|FE471378.1|FE471378
genomic: CGATCTCGGTGACACTGGATTGATCCCACTCGAGgtagcggttt ... gttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCT
EST: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAG ATTCGGTTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCTEST: gi|169024773|gb|FE433307.1|FE433307
genomic: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAGgtagcggttt ... gttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCT
EST: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTTGAG ATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCTEST: gi|169064646|gb|FE471377.1|FE471377
genomic: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAGgtagcggttt ... gttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCT
EST: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAG ATTCGGTTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCTEST: gi|169024774|gb|FE433308.1|FE433308
genomic: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAGgtagcggttt ... gttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCT
EST: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTTGAG ATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCTEST: gi|169059196|gb|FE467198.1|FE467198
genomic: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAGgtagcggttt ... gttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCT
EST: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAG ATTCGGTTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCTEST: gi|169038580|gb|FE446905.1|FE446905
genomic: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAGgtagcggttt ... gttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCT
EST: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAG ATTCGGTTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCT
genomic: CTTTGAAGCAAACCATCGATCTCGGTGACACTGGATTGATCCCACTCGAGgtagcggttt ... gttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCT
gtagcggtttttttctttttttctcttttttcctggagttttgttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCTCTGAGCAGTACTTTGGTCCGGTTCTTCAAGAAAGATGATAGCACTTGGG
tttttttctttttttc CT-rich tract
tttttttctttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcggtttttttctttttttctcttttttcctggagttttgttggtgtagATTCGATTTTTACACAATCCAGAAAAGGATACTGGCTACGTAGCCTGTGCTCTGAGCAGTACTTTGGTCCGGTTCTTCAAGAAAGATGATAGCACTTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG