1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTCCGGTGAGATTATGATCTCGTGCCTTGGAGACAAAGAAGGACGAGCACAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctcgtgagttcttgtctttcacgccattttttgtcactgttgagctttggatcttacgacttag
species | Selaginella moellendorffii |
transcript | EFJ11187 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAG ATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCAEST: gi|169035104|gb|FE444900.1|FE444900
genomic: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctc ... tacgacttagATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCA
EST: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAG ATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCAEST: gi|169059197|gb|FE467199.1|FE467199
genomic: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctc ... tacgacttagATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCA
EST: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAG --GG-AAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCAEST: gi|169070384|gb|FE479349.1|FE479349
genomic: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctc ... tacgacttagATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCA
EST: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAG ATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCAEST: gi|169103453|gb|FE507573.1|FE507573
genomic: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctc ... tacgacttagATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCA
EST: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAG ATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCAEST: gi|169064647|gb|FE471378.1|FE471378
genomic: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctc ... tacgacttagATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCA
EST: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAG ATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCAEST: gi|169099417|gb|FE501007.1|FE501007
genomic: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctc ... tacgacttagATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCA
EST: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAG ATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCAEST: gi|169057338|gb|FE466799.1|FE466799
genomic: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctc ... tacgacttagATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCA
EST: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAG ATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCAEST: gi|169026696|gb|FE433982.1|FE433982
genomic: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctc ... tacgacttagATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCA
EST: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAG ATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCAEST: gi|169069404|gb|FE479487.1|FE479487
genomic: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctc ... tacgacttagATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCA
EST: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAG ATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCAEST: gi|169024774|gb|FE433308.1|FE433308
genomic: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctc ... tacgacttagATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCA
EST: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAG ATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCAEST: gi|169038580|gb|FE446905.1|FE446905
genomic: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctc ... tacgacttagATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCA
EST: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAG ATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCA
genomic: CAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctc ... tacgacttagATGGGAAAAACAAGGACACAGTCCCTCTTTTGGCTACGACTTTTGGTATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCCGGTGAGATTATGATCTCGTGCCTTGGAGACAAAGAAGGACGAGCACAAGGAGCTGGATTCTTGCTCTTGGATGGAGAATTCAACATCAAAGGAAGgtaagttctcgtgagttcttgtctttcacgccattttttgtcactgttgagctttggatcttacgacttag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA