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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctggtaatgggaaaaagaacattcaacatggacatgctagcacgtcacgtcgaacttcacctgccgatgcaaatgatgttgattctggttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTGG

Basic information

species Physcomitrella patens
transcript PP1S99_59V6.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208372666|gb|DC952401.1|DC952401
EST:     AAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTTTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: AAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208367744|gb|DC943990.1|DC943990
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208367480|gb|DC954940.1|DC954940
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208362286|gb|DC954532.1|DC954532
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208362869|gb|DC950819.1|DC950819
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208372849|gb|DC956250.1|DC956250
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208386432|gb|DC949119.1|DC949119
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|18332636|gb|BJ164649.1|BJ164649
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|162161188|gb|FC337251.1|FC337251
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208375226|gb|DC948751.1|DC948751
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCTTATCATGAACCCAG                         GTGGCTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208363947|gb|DC950351.1|DC950351
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208397247|gb|DC920876.1|DC920876
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208366289|gb|DC943835.1|DC943835
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208365068|gb|DC943377.1|DC943377
EST:     TACTCATATATCTCACTCTTGAANTATTTTGCCCCTATCATGAACCCAAG                         GTGGTTCTTCNCTTTCACTCACATACGTC
genomic: TACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCA-Ggtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTC
EST: gi|208363068|gb|DC957995.1|DC957995
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|162177043|gb|FC353096.1|FC353096
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|37844507|gb|BJ602515.1|BJ602515
EST:     ATACTCATATATCTCACTCTNGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGNTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208372302|gb|DC948491.1|DC948491
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208369171|gb|DC956046.1|DC956046
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|67723723|gb|BJ973982.1|BJ973982
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208366442|gb|DC947610.1|DC947610
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208370554|gb|DC951590.1|DC951590
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208368605|gb|DC947922.1|DC947922
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208390945|gb|DC945934.1|DC945934
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208367603|gb|DC954979.1|DC954979
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208390278|gb|DC949518.1|DC949518
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|162280154|gb|FC455963.1|FC455963
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208369757|gb|DC951888.1|DC951888
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208381939|gb|DC923449.1|DC923449
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208367822|gb|DC944068.1|DC944068
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|37822246|gb|BJ580312.1|BJ580312
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208391966|gb|DC949429.1|DC949429
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208387185|gb|DC945484.1|DC945484
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208385469|gb|DC953088.1|DC953088
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208398833|gb|DC920781.1|DC920781
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|37834809|gb|BJ592821.1|BJ592821
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|162280155|gb|FC455964.1|FC455964
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208366370|gb|DC943874.1|DC943874
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208369942|gb|DC944280.1|DC944280
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|67725969|gb|BJ976228.1|BJ976228
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|67727485|gb|BJ977744.1|BJ977744
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208372820|gb|DC956221.1|DC956221
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208369940|gb|DC944278.1|DC944278
EST:     TACTCATATATCTCACTCTTGAAGTATTTNGCCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: TACTCATATATCTCACTCTTGAAGTATTTTG-CCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208373621|gb|DC952446.1|DC952446
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208370482|gb|DC952185.1|DC952185
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208365441|gb|DC950908.1|DC950908
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|208392926|gb|DC928612.1|DC928612
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
EST: gi|67727277|gb|BJ977536.1|BJ977536
EST:     ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAG                         GTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG
genomic: ATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 34 (downstream exon)
Score: 7

CTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCTCAGCTTCTACATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTATCATGAACCCAGgtactgaatg ... ttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcacgtcgaacttcacctgccgatgcaaatgatgttgattctggttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTGG
                                 tgttgat  putative branch site (score: 7)
                           aaatgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atctggtaatgggaaaaagaacattcaacatggacatgctagcacgtcacgtcgaacttcacctgccgatgcaaatgatgttgattctggttggtaacagGTGGTTCTTCGCTTTCACTCACATACGTCGCATCCGAGCAGATCATCCCTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - gacatgc