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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCAGAGCAAGGCATTGAAGGCTGTGAGTGGCGTGCGTGCCATGGCCTCTTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggcaatggcaatggtggagacggagtgaaacatggattccgtttttattatttattatttattattttaattggaatagtgtctaaacagttctgtgtgcttatttatatcgtttggagttttttag

Basic information

species Physcomitrella patens
transcript PP1S99_59V6.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362407|gb|DC930968.1|DC930968
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|100376551|gb|BY986221.1|BY986221
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208388729|gb|DC941528.1|DC941528
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208355241|gb|DC929744.1|DC929744
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|18373999|gb|BJ205577.1|BJ205577
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208373717|gb|DC936544.1|DC936544
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208389559|gb|DC929456.1|DC929456
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCNAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|100424723|gb|BY976783.1|BY976783
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208354826|gb|DC934358.1|DC934358
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|100452492|gb|CJ975298.1|CJ975298
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208389923|gb|DC937754.1|DC937754
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|100441629|gb|BY962720.1|BY962720
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208365068|gb|DC943377.1|DC943377
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208369066|gb|DC931637.1|DC931637
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208380442|gb|DC914866.1|DC914866
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208390204|gb|DC941983.1|DC941983
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|67719180|gb|BJ969439.1|BJ969439
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|162157331|gb|FC333459.1|FC333459
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208390690|gb|DC937846.1|DC937846
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208361941|gb|DC943233.1|DC943233
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208362182|gb|DC935624.1|DC935624
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208392588|gb|DC938553.1|DC938553
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208358028|gb|DC938871.1|DC938871
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208363548|gb|DC939753.1|DC939753
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208390983|gb|DC929302.1|DC929302
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208386618|gb|DC932680.1|DC932680
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208361752|gb|DC934992.1|DC934992
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208360154|gb|DC939179.1|DC939179
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208377951|gb|DC906908.1|DC906908
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208365560|gb|DC935713.1|DC935713
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208383608|gb|DC906999.1|DC906999
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208362624|gb|DC939520.1|DC939520
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCNAG                         GGAAAAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|67709647|gb|BJ965463.1|BJ965463
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGTTCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208364518|gb|DC930908.1|DC930908
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGNCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|208357946|gb|DC943058.1|DC943058
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|100366483|gb|BY985157.1|BY985157
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: gi|100390412|gb|BY952820.1|BY952820
EST:     TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG                         GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 21 (downstream exon)
Score: 5

AAGCAGAGCAAGGCATTGAAGGCTGTGAGTGGCGTGCGTGCCATGGCCTCTTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGCTATTGCCAAAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAAC




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