Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGCTATTGCCAAAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctttgaacctgattgaatttttgatcattcagcagaactgctagtgctgttcttggtctactctgcggagttttatttgatcgattttctttttcttttggacaatgcag

Basic information

species Physcomitrella patens
transcript PP1S99_59V6.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S99_59V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA08G45990.1 (Glycine max), 5'ss of exon 3
GTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGCTATTGCCAAAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctttgaacctgattgaatttttgatcattcagcagaactgctagtgctgttcttggtctactctg---cggagttttatttgatcgattttctttttcttttggaca-----atgcag
 |||||||||||||||||||||||  | || | ||||||||| || || ||| | ||  ||||||| ||||||||||| |||||||| || ||||| |||||| ||   |   || |||||    | | |    ||  ||| |     || |  |   ||      |   |    | | ||  |||   |  | |    || |   || | |||     ||||||
TTTCATTGCTGGTGTGGCTGATGACAATGGATATGGCTGGGCAATAGCAAAATCTCTTGCAGCAGCAGGAGCTGAAATTCTTGTCGGCACATGGGTACCTgtaagtaaatatcac-tgattctggtgtagtgtgttt-gcacattgtttacttttaccctgaaatcatgttatctctgtgtaatatacaagtggtcaggttctaacttcgaacattttcatgcag

upper sequence: PP1S99_59V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA18G31780.1 (Glycine max), 5'ss of exon 2
GTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGCTATTGCCAAAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctttgaacctgattgaatttttgatcattcagcagaactgctagtgctgttct----tggt--ctactctgcggagttttatttgatcgattttctttttcttttggaca-----atgcag
 |||||||||||||||||||||||  | || | ||||||||| || || ||| | ||  ||||||| ||||||||||| |||||||| || ||||| |||||| ||   |   || |||||    | | |    ||  | | |     || |  |   ||    || |  |  ||||| | | |   ||   |  | |    |  |   |||| |||     ||||||
TTTCATTGCTGGTGTGGCTGATGACAATGGATATGGCTGGGCAATAGCAAAATCTCTCGCAGCAGCAGGAGCTGAAATTCTTGTCGGCACATGGGTACCTgtaagtaaatattac-tgattctggtgtagtgtgttt-gtacattgtttacttttaccctgaaatgatggcatctctgtgaaat---atacaagtggtcaggtactaactttgaacattttcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362407|gb|DC930968.1|DC930968
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|100376551|gb|BY986221.1|BY986221
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208388729|gb|DC941528.1|DC941528
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208355241|gb|DC929744.1|DC929744
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|18373999|gb|BJ205577.1|BJ205577
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGA
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGA
EST: gi|208373717|gb|DC936544.1|DC936544
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208372849|gb|DC956250.1|DC956250
EST:     CGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: CGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208389559|gb|DC929456.1|DC929456
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGANAGGCAAGTTCNACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|100424723|gb|BY976783.1|BY976783
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208354826|gb|DC934358.1|DC934358
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|100452492|gb|CJ975298.1|CJ975298
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACNAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208389923|gb|DC937754.1|DC937754
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|100441629|gb|BY962720.1|BY962720
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCA-GTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208365068|gb|DC943377.1|DC943377
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208369066|gb|DC931637.1|DC931637
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208380442|gb|DC914866.1|DC914866
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208390204|gb|DC941983.1|DC941983
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208363068|gb|DC957995.1|DC957995
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|67719180|gb|BJ969439.1|BJ969439
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|162157331|gb|FC333459.1|FC333459
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208390690|gb|DC937846.1|DC937846
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208361941|gb|DC943233.1|DC943233
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208362182|gb|DC935624.1|DC935624
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208392588|gb|DC938553.1|DC938553
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAGCCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208358028|gb|DC938871.1|DC938871
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208363548|gb|DC939753.1|DC939753
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208390983|gb|DC929302.1|DC929302
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208386618|gb|DC932680.1|DC932680
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208361752|gb|DC934992.1|DC934992
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208360154|gb|DC939179.1|DC939179
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208377951|gb|DC906908.1|DC906908
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGANAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208365560|gb|DC935713.1|DC935713
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208383608|gb|DC906999.1|DC906999
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208362624|gb|DC939520.1|DC939520
EST:     AANCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|67709647|gb|BJ965463.1|BJ965463
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208364518|gb|DC930908.1|DC930908
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|208357946|gb|DC943058.1|DC943058
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|100366483|gb|BY985157.1|BY985157
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: gi|100390412|gb|BY952820.1|BY952820
EST:     AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT                         GCTCTCAACATCTTTGAGAGCAGTTTGAGGGGAGGCAAGTTCGACGAGTNC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 29 (upstream exon), 22 (downstream exon)
Score: 4

GTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGCTATTGCCAAAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGCTATTGCCAAAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctttgaacctgattgaatttttgatcattcagcagaactgctagtgctgttcttggtctactctgcggagttttatttgatcgattttctttttcttttggacaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA