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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggactcactactttctgcgtgtttgaatttggtggtaagaagaaaaaaaaatgtcttctattttttatttcgtattattaatatttttatcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGATCAATTATTCTTGTGCTAATGCACCCTTGCAAAAGGAGCTGGACGCAG

Basic information

species Physcomitrella patens
transcript PP1S99_59V6.3
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208372666|gb|DC952401.1|DC952401
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208367744|gb|DC943990.1|DC943990
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208367480|gb|DC954940.1|DC954940
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208362286|gb|DC954532.1|DC954532
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208362869|gb|DC950819.1|DC950819
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208372849|gb|DC956250.1|DC956250
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208386432|gb|DC949119.1|DC949119
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|18332636|gb|BJ164649.1|BJ164649
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|162161188|gb|FC337251.1|FC337251
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208375226|gb|DC948751.1|DC948751
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208363947|gb|DC950351.1|DC950351
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208397247|gb|DC920876.1|DC920876
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208366289|gb|DC943835.1|DC943835
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208363068|gb|DC957995.1|DC957995
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|162177043|gb|FC353096.1|FC353096
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|37844507|gb|BJ602515.1|BJ602515
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAACAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208372302|gb|DC948491.1|DC948491
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208369171|gb|DC956046.1|DC956046
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|67723723|gb|BJ973982.1|BJ973982
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208366442|gb|DC947610.1|DC947610
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208370554|gb|DC951590.1|DC951590
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208368605|gb|DC947922.1|DC947922
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208390945|gb|DC945934.1|DC945934
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208367603|gb|DC954979.1|DC954979
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208390278|gb|DC949518.1|DC949518
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|162280154|gb|FC455963.1|FC455963
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|67720959|gb|BJ971218.1|BJ971218
EST:     GGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: GGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208369757|gb|DC951888.1|DC951888
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208381939|gb|DC923449.1|DC923449
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208367822|gb|DC944068.1|DC944068
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|37822246|gb|BJ580312.1|BJ580312
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208391966|gb|DC949429.1|DC949429
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208387185|gb|DC945484.1|DC945484
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208385469|gb|DC953088.1|DC953088
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208398833|gb|DC920781.1|DC920781
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|37834809|gb|BJ592821.1|BJ592821
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|162280155|gb|FC455964.1|FC455964
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208366370|gb|DC943874.1|DC943874
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208369942|gb|DC944280.1|DC944280
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|67725969|gb|BJ976228.1|BJ976228
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|67727485|gb|BJ977744.1|BJ977744
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208372820|gb|DC956221.1|DC956221
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208369940|gb|DC944278.1|DC944278
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208373621|gb|DC952446.1|DC952446
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208370482|gb|DC952185.1|DC952185
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208365441|gb|DC950908.1|DC950908
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|162253011|gb|FC429072.1|FC429072
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|208392926|gb|DC928612.1|DC928612
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
EST: gi|67727277|gb|BJ977536.1|BJ977536
EST:     ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAG                         GACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA
genomic: ATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 5

GTTCTTGCATTCGAGGTGGGTAGAAAATATGGCATTCGGGTCAACACTATTTCAGCAGgtacgggtcc ... tcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGATCAATTATTCTTGTGCTAATGCACCCTTGCAAAAGGAGCTGGACGCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaatgtcttctattttttatttcgtattattaatatttttatcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGATCAATTATTCTTGTGCTAATGCACCCTTGCAAAAGGAGCTGGACGCAG
                               tattaat  putative branch site (score: 5)
                                       tttttatccc  CT-rich tract
     aatgtcttctattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gggactcactactttctgcgtgtttgaatttggtggtaagaagaaaaaaaaatgtcttctattttttatttcgtattattaatatttttatcccgtgcagGACCCTTAAGAAGCAGAGCAGCTAAGGCTATCGGTTTTATTGATGACATGATCAATTATTCTTGTGCTAATGCACCCTTGCAAAAGGAGCTGGACGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA