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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGATGCGCAAGTGGCATATGACTTTCACCATCTGCGGGATGAAAAACCCTGGCTCGCTCGCACTCGTGCAGCCAATAAAgtgagtctgcttgatttgctatgtttgtttttccattacaaacaatacgttttaattcacgtggggcaatctgttgtaatcacagacaatttttttgacactgaaactaacgtattagaatcacttgcag

Basic information

species Physcomitrella patens
transcript PP1S99_240V6.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S99_240V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: LOC_Os08g15090.1 (Oryza sativa), 5'ss of exon 9
GAATGGATGCGCAAGTGGCATATGACTTTCACCATCTGCGGGATGAAAAACCCTGGCTCGCTCGCACTCGTGCAGCCAATAAAgtgagtctgcttgatttgctatgtttgtttttccattacaaa-caatacgttttaattcacgtggggcaatctgttgtaatcacagacaatttttttgacactgaaactaacgtattagaatcacttgcag
| |||||||| |||||||| ||||  ||||||||||| ||||||||||| || |  || ||| |   || |  | | ||||| ||  |    |  |  | |  || |   |  ||  ||  |||  ||| |  || | |  |          || |    | | ||    |   || | || | |                             
GTATGGATGCTCAAGTGGCGTATGGATTTCACCATCTACGGGATGAAAAGCCATTCCTTGCTAGTGGTCCTTTATCTAATAAGgtatgcactcagggat-gagatttccatcattt-atggcaattcaaaagcttctcagcccaaactcctgatattgaattagcatgtgctcattatctgtctc-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162265494|gb|FC441535.1|FC441535
EST:     ATCTGCGGGATGAAAAACCCTGGCTCGCTCGCACTCGTGCAGCCAATAAA                         CTTATCTACTCCGGTTTCGGTTGCACGCAAGGTTGGTTCTGCACTGCTTGT
genomic: ATCTGCGGGATGAAAAACCCTGGCTCGCTCGCACTCGTGCAGCCAATAAAgtgagtctgc ... tcacttgcagCTTATCTACTCCGGTTTCGGTTGCACGCAAGGTTGGTTCTGCACTGCTTGT
EST: gi|162274959|gb|FC450610.1|FC450610
EST:     ATCTGCGGGATGAAAAACCCTGGCTCGCTCGCACTCGTGCAGCCAATAAA                         CTTATCTACTCCGGTTTCGGTTGCACGCAAGGTTGGTTCTGCACTGCTTGT
genomic: ATCTGCGGGATGAAAAACCCTGGCTCGCTCGCACTCGTGCAGCCAATAAAgtgagtctgc ... tcacttgcagCTTATCTACTCCGGTTTCGGTTGCACGCAAGGTTGGTTCTGCACTGCTTGT