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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctgcttgatttgctatgtttgtttttccattacaaacaatacgttttaattcacgtggggcaatctgttgtaatcacagacaatttttttgacactgaaactaacgtattagaatcacttgcagCTTATCTACTCCGGTTTCGGTTGCACGCAAGGTTGGTTCTGCACTGCTTGTTCAACGGATTCTGGTGCCAG

Basic information

species Physcomitrella patens
transcript PP1S99_240V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162265494|gb|FC441535.1|FC441535
EST:     ATCTGCGGGATGAAAAACCCTGGCTCGCTCGCACTCGTGCAGCCAATAAA                         CTTATCTACTCCGGTTTCGGTTGCACGCAAGGTTGGTTCTGCACTGCTTGT
genomic: ATCTGCGGGATGAAAAACCCTGGCTCGCTCGCACTCGTGCAGCCAATAAAgtgagtctgc ... tcacttgcagCTTATCTACTCCGGTTTCGGTTGCACGCAAGGTTGGTTCTGCACTGCTTGT
EST: gi|162274959|gb|FC450610.1|FC450610
EST:     ATCTGCGGGATGAAAAACCCTGGCTCGCTCGCACTCGTGCAGCCAATAAA                         CTTATCTACTCCGGTTTCGGTTGCACGCAAGGTTGGTTCTGCACTGCTTGT
genomic: ATCTGCGGGATGAAAAACCCTGGCTCGCTCGCACTCGTGCAGCCAATAAAgtgagtctgc ... tcacttgcagCTTATCTACTCCGGTTTCGGTTGCACGCAAGGTTGGTTCTGCACTGCTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatcacagacaatttttttgacactgaaactaacgtattagaatcacttgcagCTTATCTACTCCGGTTTCGGTTGCACGCAAGGTTGGTTCTGCACTGCTTGTTCAACGGATTCTGGTGCCAG
                             aactaac  putative branch site (score: 1)
          acaattttttt  TA-rich tract