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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcaacacttccatcagcattcttctacggaatttatgggtgttaagagaatcattcattatgaagcttcgaacttaaactgaagaagtcatgctgtgttgcttggtgtagGAATGGATGCGCAAGTGGCATATGACTTTCACCATCTGCGGGATGAAAAACCCTGGCTCGCTCGCACTCGTGCAGCCAATAAA

Basic information

species Physcomitrella patens
transcript PP1S99_240V6.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S99_240V6.1 (Physcomitrella patens), 3'ss of exon 10
lower sequence: LOC_Os08g15090.1 (Oryza sativa), 3'ss of exon 8
gtaagctcaacacttccatcagcattcttctacggaatttatgggtgttaagagaatcattcattatgaagcttcgaacttaaactgaagaagtcatgctgtgttgcttggtgtagGAATGGATGCGCAAGTGGCATATGACTTTCACCATCTGCGGGATGAAAAACCCTGGCTCGCTCGCACTCGTGCAGCCAATAAA
            ||| | |     ||  | || |    || |   | | || |     |||   ||||    |||  |    | ||  || |  ||   | |||||  |  || ||| |||||||| |||||||| ||||  ||||||||||| ||||||||||| || |  || ||| |   || |  | | ||||| 
------gtgtggctttctttgttgttactatatg----ttgtcattttcaatatgcatattacatatg----ttctgaagggaccttgaggatgcaaattctgttg--taatgcagGTATGGATGCTCAAGTGGCGTATGGATTTCACCATCTACGGGATGAAAAGCCATTCCTTGCTAGTGGTCCTTTATCTAATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162265494|gb|FC441535.1|FC441535
EST:     TGAAACAGCTCCTGCGTTTGAGGGGTTGTTTTTCAATTATTTTAGTGTCG                         GAATGGATGCGCAAGTGGCATATGACTTTCACCATCTGCGGGATGAAAAAC
genomic: TGAAACAGCTCCTGCGTTTGAGGGGTTGTTTTTCAATTATTTTAGTGTCGgtaagctcaa ... cttggtgtagGAATGGATGCGCAAGTGGCATATGACTTTCACCATCTGCGGGATGAAAAAC
EST: gi|162274959|gb|FC450610.1|FC450610
EST:     TGAAACAGCTCCTGCGTTTGAGGGGTTGTTTTTCAATTATTTTAGTGTCG                         GAATGGATGCGCAAGTGGCATATGACTTTCACCATCTGCGGGATGAAAAAC
genomic: TGAAACAGCTCCTGCGTTTGAGGGGTTGTTTTTCAATTATTTTAGTGTCGgtaagctcaa ... cttggtgtagGAATGGATGCGCAAGTGGCATATGACTTTCACCATCTGCGGGATGAAAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattatgaagcttcgaacttaaactgaagaagtcatgctgtgttgcttggtgtagGAATGGATGCGCAAGTGGCATATGACTTTCACCATCTGCGGGATGAAAAACCCTGGCTCGCTCGCACTCGTGCAGCCAATAAA
               aacttaaa  TA-rich tract