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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTGCAATCGCTGAGGATTGGGAGTCGTTTCCACGGATCTGCAGTTGACGTGGGAGTTTGAGGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAGgtactgccgtgatgggttgatgcttgcgagtcgttttgagtgatttgaggagtgagcaacgtggaaggcgagacaggaaggccctgttgcggagctttga...

Basic information

species Physcomitrella patens
transcript PP1S99_240V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100424439|gb|BY958485.1|BY958485
EST:     CGTGGGAGTTTGAGGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAG                         GTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA
genomic: CGTGGGAGTTTGAGGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAGgtactgccgt ... ccatatgcagGTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA
EST: gi|18326787|gb|BJ158787.1|BJ158787
EST:     CGTGGGAGTTTGAGGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAG                         GTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA
genomic: CGTGGGAGTTTGAGGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAGgtactgccgt ... ccatatgcagGTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA
EST: gi|18364027|gb|BJ196100.1|BJ196100
EST:     GGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAG                         GTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA
genomic: GGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAGgtactgccgt ... ccatatgcagGTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA
EST: gi|18365849|gb|BJ197927.1|BJ197927
EST:     GAGGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAG                         GTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA
genomic: GAGGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAGgtactgccgt ... ccatatgcagGTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA
EST: gi|18364469|gb|BJ196542.1|BJ196542
EST:     GAGGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAG                         GTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA
genomic: GAGGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAGgtactgccgt ... ccatatgcagGTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA
EST: gi|18359123|gb|BJ191183.1|BJ191183
EST:     GGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAG                         GTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA
genomic: GGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAGgtactgccgt ... ccatatgcagGTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA
EST: gi|100427823|gb|BY959142.1|BY959142
EST:     CGTGGGAGTTTGAGGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAG                         GTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA
genomic: CGTGGGAGTTTGAGGTCGGCTTTTGGCGAATTGAATGCAGCGGCAGTGAGgtactgccgt ... ccatatgcagGTTTTCTCTGGAAATGATTTCGGAGGGAAAACCTGCTGCTGTGATTGCGGA