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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTACTTTACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttttcctccagatagtccacaatggtgaaatagtagtgcttaaacatgtgcaaaatattggctcaatttaatatgtccttaatttcaacacac...

Basic information

species Physcomitrella patens
transcript PP1S99_229V6.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362752|gb|DC950552.1|DC950552
EST:     TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATG                         GTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
genomic: TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttt ... ttcccaacagGTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
EST: gi|162166627|gb|FC343519.1|FC343519
EST:     TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATG                         GTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
genomic: TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttt ... ttcccaacagGTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
EST: gi|162229837|gb|FC404290.1|FC404290
EST:     TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATG                         GTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
genomic: TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttt ... ttcccaacagGTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
EST: gi|208367799|gb|DC944045.1|DC944045
EST:     TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATG                         GTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
genomic: TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttt ... ttcccaacagGTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
EST: gi|15730199|gb|BI741729.1|BI741729
EST:     TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATG                         GTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
genomic: TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttt ... ttcccaacagGTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
EST: gi|162167043|gb|FC342505.1|FC342505
EST:     TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATG                         GTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
genomic: TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttt ... ttcccaacagGTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
EST: gi|37828787|gb|BJ586799.1|BJ586799
EST:     TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATG                         GTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
genomic: TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttt ... ttcccaacagGTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
EST: gi|100411668|gb|BY992279.1|BY992279
EST:     TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATG                         GTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
genomic: TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttt ... ttcccaacagGTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
EST: gi|7583079|gb|AW699243.1|AW699243
EST:     CCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATG                         GTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
genomic: CCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttt ... ttcccaacagGTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
EST: gi|208396585|gb|DC915897.1|DC915897
EST:     TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATG                         GTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
genomic: TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttt ... ttcccaacagGTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
EST: gi|208369415|gb|DC948181.1|DC948181
EST:     TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATG                         GTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
genomic: TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttt ... ttcccaacagGTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
EST: gi|37841726|gb|BJ599734.1|BJ599734
EST:     TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATG                         GTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
genomic: TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttt ... ttcccaacagGTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT
EST: gi|208367777|gb|DC944023.1|DC944023
EST:     TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATG                         GTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACCCACAAAAGAT
genomic: TACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttt ... ttcccaacagGTCTCGACAGTTGGAGAGGAACTCAAGTTCAATACTCGACTCACAAAAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTTTACTTTACCAAAAGAGACACTCATCTACCCTGCCCATGATTACAAAGGACACATGgtaagctttttcctccagatagtccacaatggtgaaatagtagtgcttaaacatgtgcaaaatattggctcaatttaatatgtccttaatttcaacacac

- - - - - - - - AAGAGA